Jatropha Genome Database
- JcCB0026071.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0026071.10 - phase: 0
(171 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g129230.1 Ribulose bisphosphate carboxylase, small ch... 266 3e-72
IMGA|Medtr6g020290.1 Ribulose bisphosphate carboxylase, small ch... 191 2e-49
IMGA|Medtr6g020290.2 Ribulose bisphosphate carboxylase, small ch... 189 4e-49
IMGA|Medtr6g020280.1 Ribulose bisphosphate carboxylase, small ch... 189 4e-49
IMGA|AC233685_63.1 Ribulose bisphosphate carboxylase, small chai... 182 8e-47
IMGA|AC233109_18.1 Ribulose bisphosphate carboxylase, small chai... 181 1e-46
IMGA|AC233685_63.3 Ribulose bisphosphate carboxylase, small chai... 180 3e-46
IMGA|Medtr8g129230.3 Ribulose bisphosphate carboxylase, small ch... 153 4e-38
IMGA|Medtr8g129230.2 Ribulose bisphosphate carboxylase, small ch... 141 2e-34
IMGA|AC233685_63.2 Ribulose bisphosphate carboxylase, small chai... 84 3e-17
IMGA|AC233109_2.1 Ribulose bisphosphate carboxylase, small chain... 84 3e-17
IMGA|AC233109_9.1 Ribulose bisphosphate carboxylase, small chain... 83 6e-17
IMGA|Medtr3g073590.1 Ribulose bisphosphate carboxylase, small ch... 73 6e-14
>IMGA|Medtr8g129230.1 Ribulose bisphosphate carboxylase, small chain
chr08_pseudomolecule_IMGAG_V3 30436036-30438784 E
EGN_Mt090430 20090702
Length = 173
Score = 266 bits (681), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 123/166 (74%), Positives = 137/166 (82%)
Query: 4 SAGILTSAVAGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFE 63
SAG + VAG G+ GLK+NS+ A SI W KTVSNGS+IHCMKTWNPINNKKFE
Sbjct: 2 SAGTFAAPVAGPGFVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKFE 61
Query: 64 TLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFDEVGHVRRENSRMPGYYDGRYWTLWKLPM 123
TLSYLPPLSDDSIAK IDYM+K W PCLEFDE G + R NS+MPGYYDGRYWTLWKLPM
Sbjct: 62 TLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFDEFGCIHRANSQMPGYYDGRYWTLWKLPM 121
Query: 124 FGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
FGCNDS+QVLNE++ECKK YPNAYIRCLAFDNK+ Q M+F+I KP
Sbjct: 122 FGCNDSSQVLNEINECKKTYPNAYIRCLAFDNKRHMQAMAFVIHKP 167
>IMGA|Medtr6g020290.1 Ribulose bisphosphate carboxylase, small chain
chr06_pseudomolecule_IMGAG_V3 4746439-4748051 E
EGN_Mt090430 20090702
Length = 180
Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 122/178 (68%), Gaps = 12/178 (6%)
Query: 1 MSASAGILTSAVAGSG-------YQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMK 52
+ +SA + T + A S + GLK+++A FP + + ++ SNG R++CM+
Sbjct: 3 LISSAAVTTVSRASSTQANLVAPFTGLKSSAA---FPVTKKTNNDITSIASNGGRVNCMQ 59
Query: 53 TWNPINNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYY 111
W PI KKFETLSYLPPL+++ +AK ++Y+I+ GW+PCLEF+ E G V REN PGYY
Sbjct: 60 VWPPIGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYY 119
Query: 112 DGRYWTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
DGRYWT+WKLP+FG DS+QVL E+ E K AYP ++IR + FDN +Q QC+SFI P
Sbjct: 120 DGRYWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTP 177
>IMGA|Medtr6g020290.2 Ribulose bisphosphate carboxylase, small chain
chr06_pseudomolecule_IMGAG_V3 4743477-4748051 E
EGN_Mt090430 20090702
Length = 177
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 121/175 (69%), Gaps = 9/175 (5%)
Query: 1 MSASAGILT----SAVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWN 55
+ +SA + T SA + + GLK+++ FP + + ++ SNG R++CM+ W
Sbjct: 3 LISSAAVTTVNRVSANLVAPFTGLKSSAG---FPVTKKTNNDITSITSNGGRVNCMQVWP 59
Query: 56 PINNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGR 114
PI KKFETLSYLPPL++D +AK ++Y+I+ GW+PCLEF+ E G V REN PGYYDGR
Sbjct: 60 PIGKKKFETLSYLPPLTEDQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGR 119
Query: 115 YWTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
YWT+WKLP+FG DS+QVL E+ E K AYP ++IR + FDN +Q QC+SFI P
Sbjct: 120 YWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTP 174
>IMGA|Medtr6g020280.1 Ribulose bisphosphate carboxylase, small chain
chr06_pseudomolecule_IMGAG_V3 4743477-4745017 F
EGN_Mt090430 20090702
Length = 177
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 121/175 (69%), Gaps = 9/175 (5%)
Query: 1 MSASAGILT----SAVAGSGYQGLKANSAKQLFPAKDSISWNSKTV-SNGSRIHCMKTWN 55
+ +SA + T SA + + GLK+++ FP + + ++ SNG R++CM+ W
Sbjct: 3 LISSAAVTTVNRVSANLVAPFTGLKSSAG---FPVTKKTNNDITSITSNGGRVNCMQVWP 59
Query: 56 PINNKKFETLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGR 114
PI KKFETLSYLPPL++D +AK ++Y+I+ GW+PCLEF+ E G V REN PGYYDGR
Sbjct: 60 PIGKKKFETLSYLPPLTEDQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGR 119
Query: 115 YWTLWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
YWT+WKLP+FG DS+QVL E+ E K AYP ++IR + FDN +Q QC+SFI P
Sbjct: 120 YWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTP 174
>IMGA|AC233685_63.1 Ribulose bisphosphate carboxylase, small chain
AC233685.2 269264-267394 E EGN_Mt090430 20090702
Length = 181
Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 4/160 (2%)
Query: 13 AGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFETLSYLPPLS 72
A + + GLK+ + FP + SNG R++CM+ W PI KKFETLSYLPPL+
Sbjct: 24 AVAPFVGLKSMAG---FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLT 80
Query: 73 DDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQ 131
+ +AK ++Y+I+ GW+ CLEF+ E G V REN PGYYDGRYWT+WKLP+FG D++Q
Sbjct: 81 REQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQ 140
Query: 132 VLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKPQL 171
VL E+ E AYPNA++R + FDN +Q QC+SFI P +
Sbjct: 141 VLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPDV 180
>IMGA|AC233109_18.1 Ribulose bisphosphate carboxylase, small chain
AC233109.4 68239-70681 E EGN_Mt090430 20090702
Length = 181
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 81/160 (50%), Positives = 109/160 (68%), Gaps = 4/160 (2%)
Query: 13 AGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFETLSYLPPLS 72
A + + GLK+ + FP + SNG R++CM+ W PI KKFETLSYLPPL+
Sbjct: 24 AVAPFVGLKSMAG---FPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLT 80
Query: 73 DDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQ 131
+ +AK ++Y+I+ GW+ CLEF+ E G V REN PGYYDGRYWT+WKLP+FG D++Q
Sbjct: 81 REQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLPLFGATDASQ 140
Query: 132 VLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKPQL 171
VL E+ E AYPNA++R + FDN +Q QC+SFI P +
Sbjct: 141 VLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPDV 180
>IMGA|AC233685_63.3 Ribulose bisphosphate carboxylase, small chain;
ABC transporter related; Glycoside hydrolase, family 81
AC233685.2 269264-261629 E EGN_Mt090430 20090702
Length = 785
Score = 180 bits (456), Expect = 3e-46, Method: Composition-based stats.
Identities = 83/167 (49%), Positives = 113/167 (67%), Gaps = 6/167 (3%)
Query: 4 SAGILTSAVAGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFE 63
++ + + AVA + GLK+ + FP + SNG R++CM+ W PI KKFE
Sbjct: 17 ASSVQSGAVAP--FVGLKSMAG---FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFE 71
Query: 64 TLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD-EVGHVRRENSRMPGYYDGRYWTLWKLP 122
TLSYLPPL+ + +AK ++Y+I+ GW+ CLEF+ E G V REN PGYYDGRYWT+WKLP
Sbjct: 72 TLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKLP 131
Query: 123 MFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKP 169
+FG D++QVL E+ E AYPNA++R + FDN +Q QC+SFI P
Sbjct: 132 LFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTP 178
>IMGA|Medtr8g129230.3 Ribulose bisphosphate carboxylase, small chain
chr08_pseudomolecule_IMGAG_V3 30436036-30438784 E
EGN_Mt090430 20090702
Length = 93
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 75/87 (86%)
Query: 83 MIKMGWIPCLEFDEVGHVRRENSRMPGYYDGRYWTLWKLPMFGCNDSAQVLNEMHECKKA 142
M+K W PCLEFDE G + R NS+MPGYYDGRYWTLWKLPMFGCNDS+QVLNE++ECKK
Sbjct: 1 MLKKRWTPCLEFDEFGCIHRANSQMPGYYDGRYWTLWKLPMFGCNDSSQVLNEINECKKT 60
Query: 143 YPNAYIRCLAFDNKKQCQCMSFIIQKP 169
YPNAYIRCLAFDNK+ Q M+F+I KP
Sbjct: 61 YPNAYIRCLAFDNKRHMQAMAFVIHKP 87
>IMGA|Medtr8g129230.2 Ribulose bisphosphate carboxylase, small
chain chr08_pseudomolecule_IMGAG_V3 30436036-30436851 E
EGN_Mt090430 20090702
Length = 98
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 74/94 (78%)
Query: 4 SAGILTSAVAGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFE 63
SAG + VAG G+ GLK+NS+ A SI W KTVSNGS+IHCMKTWNPINNKKFE
Sbjct: 2 SAGTFAAPVAGPGFVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKFE 61
Query: 64 TLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFDEV 97
TLSYLPPLSDDSIAK IDYM+K W PCLEFDEV
Sbjct: 62 TLSYLPPLSDDSIAKEIDYMLKKRWTPCLEFDEV 95
>IMGA|AC233685_63.2 Ribulose bisphosphate carboxylase, small chain
AC233685.2 269264-267394 E EGN_Mt090430 20090702
Length = 106
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 17 YQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFETLSYLPPLSDDSI 76
+ GLK+ + FP + SNG R++CM+ W PI KKFETLSYLPPL+ + +
Sbjct: 28 FVGLKSMAG---FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQL 84
Query: 77 AKNIDYMIKMGWIPCLEFD 95
AK ++Y+I+ GW+ CLEF+
Sbjct: 85 AKEVEYLIRKGWVACLEFE 103
>IMGA|AC233109_2.1 Ribulose bisphosphate carboxylase, small chain
AC233109.4 19247-19908 E EGN_Mt090430 20090702
Length = 106
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 17 YQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFETLSYLPPLSDDSI 76
+ GLK+ + FP + SNG R++CM+ W PI KKFETLSYLPPL+ + +
Sbjct: 28 FVGLKSMAG---FPVTKVNKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQL 84
Query: 77 AKNIDYMIKMGWIPCLEFD 95
AK ++Y+I+ GW+ CLEF+
Sbjct: 85 AKEVEYLIRKGWVACLEFE 103
>IMGA|AC233109_9.1 Ribulose bisphosphate carboxylase, small chain
AC233109.4 42282-46041 E EGN_Mt090430 20090702
Length = 208
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Query: 4 SAGILTSAVAGSGYQGLKANSAKQLFPAKDSISWNSKTVSNGSRIHCMKTWNPINNKKFE 63
++ + + AVA + GLK+ + FP + SNG R++CM+ W PI KKFE
Sbjct: 17 ASSVQSGAVAP--FVGLKSMAG---FPITKVNKDITSITSNGGRVNCMQVWPPIGKKKFE 71
Query: 64 TLSYLPPLSDDSIAKNIDYMIKMGWIPCLEFD 95
TLSYLPPL+ + +AK ++Y+I+ GW+ CLEF+
Sbjct: 72 TLSYLPPLTREQLAKEVEYLIRKGWVACLEFE 103
>IMGA|Medtr3g073590.1 Ribulose bisphosphate carboxylase, small chain
chr03_pseudomolecule_IMGAG_V3 17066840-17066382 E
EGN_Mt090430 20090702
Length = 55
Score = 73.2 bits (178), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 118 LWKLPMFGCNDSAQVLNEMHECKKAYPNAYIRCLAFDNKKQCQCMSFIIQKPQL 171
+WKLP+FG D++QVL E+ E AYPNA++R + FDN +Q QC+SFI P +
Sbjct: 1 MWKLPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPDV 54