Jatropha Genome Database

JcCB0025751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025751.10 - phase: 0 /partial
         (191 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g143090.1 DNA-directed DNA polymerase B chr03_pseudom...   336   4e-93
IMGA|Medtr7g139140.1 DNA-directed DNA polymerase B chr07_pseudom...    75   2e-14

>IMGA|Medtr3g143090.1 DNA-directed DNA polymerase B
           chr03_pseudomolecule_IMGAG_V3 36821997-36824717 E
           EGN_Mt090430 20090702
          Length = 194

 Score =  336 bits (861), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 160/191 (83%), Positives = 168/191 (87%)

Query: 1   RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRI 60
           RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKP+LRI
Sbjct: 4   RDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRI 63

Query: 61  FEPILKNASKELLHGXXXXXXXXXXXXXXXXMKFAKKQLSCIGCKALISNSDRTLCSHCK 120
           FEPILKNASKELLHG                MKFAKKQ +CIGCKAL+S    TLC HCK
Sbjct: 64  FEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQYTCIGCKALLSTGISTLCIHCK 123

Query: 121 GREAELYCKTVSQVSELELLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA 180
           GREAELYCKTV+QVS+LE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA
Sbjct: 124 GREAELYCKTVAQVSDLEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMA 183

Query: 181 EAKRQLDRWNF 191
           EA+ QLDRW+F
Sbjct: 184 EARLQLDRWSF 194


>IMGA|Medtr7g139140.1 DNA-directed DNA polymerase B
           chr07_pseudomolecule_IMGAG_V3 33209886-33202421 H
           EGN_Mt090430 20090702
          Length = 1012

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 80/191 (41%), Gaps = 11/191 (5%)

Query: 2   DAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIP--IDPQYYLENQISKPLLR 59
           D    P   +R+PYV+I    GA+  +   DP+ VL  + P  I+  YY+  QI   L R
Sbjct: 805 DRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQR 864

Query: 60  IFEPI---LKNASKELLHGXXXXXXXXXXXXXXXXMKFAKKQLS--CIGCKALISNSDRT 114
           +F  +   L     E+                    +     LS  C+ C  L+  S R 
Sbjct: 865 VFGLVGADLNQWFAEMPRPVREASVKHAFTPNFQRTRIDYYYLSKHCVLCGGLVQASAR- 923

Query: 115 LCSHCKGREAELYCKTVSQVSELELLFGRLWTQCQECQGS---LHQDVLCTSRDCPIFYR 171
           LCS C   E       + + ++LE     L + CQ C G    L   V CTS  C +FY 
Sbjct: 924 LCSQCSENEVAAATAVIGKTAKLEQEMQHLVSICQHCGGGDRLLESGVKCTSISCLVFYE 983

Query: 172 RKKAQKDMAEA 182
           R+K QK++  A
Sbjct: 984 RRKVQKELLAA 994