Jatropha Genome Database

JcCB0025551.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025551.20 + phase: 2 /partial
         (206 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g027360.1 Mob1/phocein chr05_pseudomolecule_IMGAG_V3 ...   383   e-107

>IMGA|Medtr5g027360.1 Mob1/phocein chr05_pseudomolecule_IMGAG_V3
           11122598-11128373 F EGN_Mt090430 20090702
          Length = 213

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 194/204 (95%)

Query: 1   NQKTFRPKKNAPSGSKGAQLQKHIDATLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQV 60
           NQ+TFRPKK+ PSGSKGAQL+KHIDATLGSGNLREAV+LPPGED+NEWLAVNTVDFFNQV
Sbjct: 9   NQRTFRPKKSTPSGSKGAQLRKHIDATLGSGNLREAVKLPPGEDLNEWLAVNTVDFFNQV 68

Query: 61  NILYGTLTEFCTATSCPTMTAGPKYEYRWADGITIKKPIEVSAPKYVEYLMDWIEAQLDD 120
           N+LYGTLTEFCT  +C TM+AGPKYEYRWADG+ IKKPIEVSAPKYVEYLMDWIE+QLDD
Sbjct: 69  NLLYGTLTEFCTPENCRTMSAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDD 128

Query: 121 EMIFPQKLGAPFPTNFRDVVKTIFKRLFRVYAHIYHEHFQKIVSLKEEAHLNTCFKHFVL 180
           E IFPQKLG+PFPTNF+DVVKTIFKRLFRVYAHIYH HFQKIVSLKEEAHLNTCFKHF+L
Sbjct: 129 ESIFPQKLGSPFPTNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 188

Query: 181 FTWEFRLIDKGELAPLQDLVESIL 204
           FT EF LIDK ELAPLQ+L+E+I+
Sbjct: 189 FTCEFGLIDKKELAPLQELIETII 212