Jatropha Genome Database

JcCB0025091.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0025091.20 + phase: 0 
         (95 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g108480.1 hypothetical protein chr07_pseudomolecule_I...   144   8e-36

>IMGA|Medtr7g108480.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 25553092-25556253 E
          EGN_Mt090430 20090702
          Length = 93

 Score =  144 bits (364), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 81/93 (87%)

Query: 1  MGSMLGDWPSFDPQNFSQLRPTDPANPSKMTPATYHPTHSRTLPPPDQVISTEAKNILLR 60
          M S+LG+ PS++P NFSQ+RP+DP++ SKMT  TYHPTH RTLPPPDQVI+TEAKNILLR
Sbjct: 1  MDSVLGNLPSYNPHNFSQIRPSDPSSSSKMTITTYHPTHDRTLPPPDQVINTEAKNILLR 60

Query: 61 NFYERAEERLRPKRAASESLIPEHGCKQPRAST 93
          + Y+ A E+L+PKRAA+ +L+PEHGCKQPR ST
Sbjct: 61 HIYQNAREKLKPKRAAAGNLLPEHGCKQPRVST 93