Jatropha Genome Database

JcCB0023791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0023791.10 + phase: 0 /partial
         (112 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g015020.1 Zinc finger, RING-type chr07_pseudomolecule...   103   3e-23
IMGA|AC235567_12.1 Zinc finger, RING-type AC235567.1 46372-52293...    77   2e-15
IMGA|Medtr8g031830.1 Zinc finger, RING-type chr08_pseudomolecule...    77   2e-15
IMGA|Medtr5g049160.1 Zinc finger, RING-type chr05_pseudomolecule...    74   2e-14
IMGA|Medtr2g104600.1 Zinc finger, RING-type chr02_pseudomolecule...    62   7e-11
IMGA|Medtr2g104600.2 Zinc finger, RING-type chr02_pseudomolecule...    62   7e-11
IMGA|Medtr5g022920.1 Zinc finger, RING-type chr05_pseudomolecule...    52   1e-07
IMGA|Medtr1g078920.1 Zinc finger, RING-type chr01_pseudomolecule...    49   7e-07
IMGA|Medtr8g125420.1 Zinc finger, RING-type chr08_pseudomolecule...    47   3e-06
IMGA|Medtr8g089110.1 Zinc finger, RING-type chr08_pseudomolecule...    46   4e-06
IMGA|Medtr1g116920.1 Zinc finger, RING-type chr01_pseudomolecule...    45   9e-06
IMGA|Medtr1g078890.1 Zinc finger, RING-type chr01_pseudomolecule...    45   9e-06
IMGA|Medtr5g075250.1 Zinc finger, RING-type chr05_pseudomolecule...    45   1e-05

>IMGA|Medtr7g015020.1 Zinc finger, RING-type
           chr07_pseudomolecule_IMGAG_V3 3683692-3688795 E
           EGN_Mt090430 20090702
          Length = 227

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 57/75 (76%)

Query: 18  SKSPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWM 77
           SKS   +  +KL      +YAS ++EDVCPTCLE+Y+ +NP+IVT C HH+HLGCIYEWM
Sbjct: 149 SKSSVRLSSAKLTTGAALVYASSEEEDVCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWM 208

Query: 78  ERSQSCPLCFKVINF 92
           ERS SCP+C KV+ F
Sbjct: 209 ERSDSCPVCGKVMLF 223


>IMGA|AC235567_12.1 Zinc finger, RING-type AC235567.1 46372-52293 E
           EGN_Mt090430 20090702
          Length = 191

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 9   VRSSDYNNSSKSPHPIRESKLEA-EITYLYA-SQDDEDVCPTCLEDYSFDNPRIVTHCQH 66
           +  SD    +KS  PI  +K E  +   L+A   ++ED CP CLE+Y  +NP+ ++ C+H
Sbjct: 102 IEESDLKAQAKS-APISPTKAELWKSNELHALVIEEEDGCPICLEEYDVENPKTLSKCEH 160

Query: 67  HFHLGCIYEWMERSQSCPLCFKVINFFN 94
           HFHL CI EWMERS SCP+C + + F  
Sbjct: 161 HFHLACILEWMERSDSCPICDQEMIFVQ 188


>IMGA|Medtr8g031830.1 Zinc finger, RING-type
           chr08_pseudomolecule_IMGAG_V3 6885292-6880695 F
           EGN_Mt090430 20090702
          Length = 191

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 3/88 (3%)

Query: 9   VRSSDYNNSSKSPHPIRESKLEA-EITYLYA-SQDDEDVCPTCLEDYSFDNPRIVTHCQH 66
           +  SD    +KS  PI  +K E  +   L+A   ++ED CP CLE+Y  +NP+ ++ C+H
Sbjct: 102 IEESDLKAQAKS-APISPTKAELWKSNELHALVIEEEDGCPICLEEYDVENPKTLSKCEH 160

Query: 67  HFHLGCIYEWMERSQSCPLCFKVINFFN 94
           HFHL CI EWMERS SCP+C + + F  
Sbjct: 161 HFHLACILEWMERSDSCPICDQEMIFVQ 188


>IMGA|Medtr5g049160.1 Zinc finger, RING-type
           chr05_pseudomolecule_IMGAG_V3 20964819-20963321 H
           EGN_Mt090430 20090702
          Length = 160

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 10/96 (10%)

Query: 7   DIVRSSDYNNSSKSPHPIRE------SKLEAEITYLYASQD----DEDVCPTCLEDYSFD 56
            IV S  +  S  +P P  +      +K+EA+ T  + + +    D+D C  C EDY+ +
Sbjct: 35  SIVYSYRHMGSFSTPFPFSKNPAAANTKVEAKSTLKHVAHETESSDKDNCLICFEDYTDE 94

Query: 57  NPRIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINF 92
           NP+I T C HH+HL CIYEWM  S++CP+C +V N 
Sbjct: 95  NPKIATRCCHHYHLSCIYEWMSMSKTCPVCRQVRNL 130


>IMGA|Medtr2g104600.1 Zinc finger, RING-type
          chr02_pseudomolecule_IMGAG_V3 24708804-24712458 E
          EGN_Mt090430 20090702
          Length = 383

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 26 ESKLEAEITYLYA-----SQDD-EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMER 79
          E+K EA +T   A      QD  +D C  CLE++   +P  VT C+H FHL CI EW +R
Sbjct: 11 ETKSEAHLTSAAAFVEGGIQDACDDSCSICLEEFIDSDPSTVTSCKHEFHLQCILEWCQR 70

Query: 80 SQSCPLCFKVINF 92
          S  CP+C++ I+ 
Sbjct: 71 SSQCPMCWQSISL 83


>IMGA|Medtr2g104600.2 Zinc finger, RING-type
          chr02_pseudomolecule_IMGAG_V3 24708804-24712458 E
          EGN_Mt090430 20090702
          Length = 382

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 26 ESKLEAEITYLYA-----SQDD-EDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMER 79
          E+K EA +T   A      QD  +D C  CLE++   +P  VT C+H FHL CI EW +R
Sbjct: 11 ETKSEAHLTSAAAFVEGGIQDACDDSCSICLEEFIDSDPSTVTSCKHEFHLQCILEWCQR 70

Query: 80 SQSCPLCFKVINF 92
          S  CP+C++ I+ 
Sbjct: 71 SSQCPMCWQSISL 83


>IMGA|Medtr5g022920.1 Zinc finger, RING-type
           chr05_pseudomolecule_IMGAG_V3 8947700-8945472 F
           EGN_Mt090430 20090702
          Length = 234

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 1   QITNGFDIVRSSDYNNSSKSPHPIRESKLEAEITYLYASQDDEDVCPTCLEDYSF-DNPR 59
           ++ N FDI  S   +  S S  P    K++     + AS +    C  CL+D+   +  R
Sbjct: 149 EVQNIFDIGGSKGLSVDSVSKIP----KIKITADNIEASGEKVS-CSVCLQDFQLGETVR 203

Query: 60  IVTHCQHHFHLGCIYEWMERSQSCPLC 86
            + HC H FHL CI  W+ R  SCPLC
Sbjct: 204 SLPHCHHMFHLPCIDMWLLRHGSCPLC 230


>IMGA|Medtr1g078920.1 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 15659179-15663773 H
           EGN_Mt090430 20090702
          Length = 692

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 27  SKLEAEITYLYASQDDEDVCPTCLEDY-SFDNPRIVTHCQHHFHLGCIYEWMERSQSCPL 85
           SK   +  Y  A Q  E  C  CLE+Y + D+   +  C H +H+ CI +W+     CP+
Sbjct: 624 SKYLTKTLYCSAEQSQEGTCAICLEEYKNMDSIGTLETCGHDYHVSCIRKWLSMKNLCPI 683

Query: 86  C 86
           C
Sbjct: 684 C 684


>IMGA|Medtr8g125420.1 Zinc finger, RING-type
           chr08_pseudomolecule_IMGAG_V3 29253270-29248931 E
           EGN_Mt090430 20090702
          Length = 367

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 36  LYASQDDEDVCPTCLEDYSFDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           L A   D   CP CLE++   N      C H+FH+ CI EW+  +  CP C
Sbjct: 211 LKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRC 261


>IMGA|Medtr8g089110.1 Zinc finger, RING-type
           chr08_pseudomolecule_IMGAG_V3 19068367-19070335 H
           EGN_Mt090430 20090702
          Length = 225

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 46  CPTCLEDYSF-DNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
           C  CLED+   +  R + HC H FH+ CI +W+ +  SCPLC
Sbjct: 180 CSVCLEDFQIGETVRSLPHCHHMFHIPCIDKWLIKHGSCPLC 221


>IMGA|Medtr1g116920.1 Zinc finger, RING-type
          chr01_pseudomolecule_IMGAG_V3 24884518-24883364 E
          EGN_Mt090430 20090702
          Length = 166

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 46 CPTCLEDYS-FDNPRIVTHCQHHFHLGCIYEWMERSQSCPLC 86
          C  CL +Y   D  RI+ HC H FH+ CI  W++++ +CP+C
Sbjct: 30 CTVCLSEYQDEDTLRILPHCGHSFHMACIDLWLQQNATCPVC 71


>IMGA|Medtr1g078890.1 Zinc finger, RING-type
           chr01_pseudomolecule_IMGAG_V3 15645826-15649837 E
           EGN_Mt090430 20090702
          Length = 584

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 27  SKLEAEITYLYASQDDEDVCPTCLEDY-SFDNPRIVTHCQHHFHLGCIYEWMERSQSCPL 85
           SK   +  Y  A Q  E  C  CL +Y + D+   +  C H++H+ CI +W+     CP+
Sbjct: 516 SKYLTKTLYCSAEQSQEGTCAICLVEYKNMDDVGTMKTCGHNYHVSCIRKWLSMKNMCPI 575

Query: 86  C 86
           C
Sbjct: 576 C 576


>IMGA|Medtr5g075250.1 Zinc finger, RING-type
           chr05_pseudomolecule_IMGAG_V3 27366537-27365236 H
           EGN_Mt090430 20090702
          Length = 433

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 46  CPTCLEDYSFDNP---RIVTHCQHHFHLGCIYEWMERSQSCPLCFKVINFFNLYLP 98
           C  CL    F++P   R++  C+H FH+ C+  W++   SCPLC   +N  ++ LP
Sbjct: 160 CAVCLN--GFEDPDVLRLLPKCKHAFHMECVDMWLDEHSSCPLCRYKVNPDDIVLP 213