Jatropha Genome Database

JcCB0022671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022671.10 + phase: 2 /partial
         (423 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g114320.1 Homeobox chr02_pseudomolecule_IMGAG_V3 2699...   315   4e-86
IMGA|Medtr4g079080.1 Homeobox chr04_pseudomolecule_IMGAG_V3 1566...   258   5e-69

>IMGA|Medtr2g114320.1 Homeobox chr02_pseudomolecule_IMGAG_V3
           26999416-27005254 E EGN_Mt090430 20090702
          Length = 748

 Score =  315 bits (806), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/420 (47%), Positives = 255/420 (60%), Gaps = 62/420 (14%)

Query: 15  LVRVFFNQLHSLISPADFEENQAQEI---KFERSISLDKFSKLDINEHHQEAQSTVGYS- 70
           L+RVFF +L SL +   F  N+ Q+    K E S S DKFSKL+INE +Q AQS  G   
Sbjct: 377 LLRVFFGELQSLFTSNGFGRNRVQKTQDGKCEES-SWDKFSKLNINECYQGAQSAGGRPL 435

Query: 71  PLLKKETSTLNNVSSNQKEEMSENSAFQE-EQLNFKNERMNRGDDAMK----EDKGKAGG 125
           PL  KE + LN     + E MSENSA    EQ N   E   +G+   +    E+KG +G 
Sbjct: 436 PLTSKEQADLNK-KGGKVEGMSENSANPNLEQRNTTAEDTIQGNGPSRQSQVENKGISGK 494

Query: 126 TASAVSREMDRDFQNVETSGSDTSSTRGKNFVGQMGNGDFAKSSDLVKENGRQGVQEDGK 185
           TAS  +R++D+D   +ETS SD SS +GKN V  + NG+ +KS++ +K   R GV+E+ +
Sbjct: 495 TASGGARDIDKDAHKIETSCSDASSAKGKNVVVHVDNGELSKSNERLK---RVGVEENPE 551

Query: 186 VGTIQFEEKPRKRKRTIMNDYQMSLIEKALVDEPDMQRNSASIQRWADKLSIHGSEVTFS 245
              I+  ++ +KRKRTIMN  Q+++IE AL+DEPDMQRN+A +Q WADKLS  G EVT S
Sbjct: 552 DEKIELAQR-KKRKRTIMNAEQVTMIENALLDEPDMQRNAALLQSWADKLSSDGPEVTSS 610

Query: 246 QLKNWLNNRKARLAR-AGKDVR-APVEFDSAHSVKQ-GMSTHSHDSPESRGEDNAPSGAR 302
           QLKNWLNNRKARLAR A KDVR A  + D+  S +Q G +  SH SP S           
Sbjct: 611 QLKNWLNNRKARLARTAAKDVRPAAADVDNQVSDRQRGPTIGSHGSPVS----------- 659

Query: 303 LVPSTSRIGTSENAETSLAEFVGIGAAEFVQCKPGQYVVLVDKQGEEIGKAKVYQVQGKW 362
                                             GQYVVLV  QGEEIGK  V+Q Q KW
Sbjct: 660 ---------------------------------AGQYVVLVGVQGEEIGKGTVFQTQDKW 686

Query: 363 YGKNLEESETCVVDVTELKADRWVRLPYPSEATGTSFSEAETKLGVMRVLWDSNKIFMFR 422
           +GKNLEES TCVVDV EL+ D+ +RLPY SEA GT+F++A+TK G+MR++WD NK+ + R
Sbjct: 687 FGKNLEESATCVVDVCELRVDKGLRLPYSSEAIGTTFADAQTKFGIMRIVWDLNKVLVLR 746


>IMGA|Medtr4g079080.1 Homeobox chr04_pseudomolecule_IMGAG_V3
           15661054-15654628 E EGN_Mt090430 20090702
          Length = 613

 Score =  258 bits (658), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 236/452 (52%), Gaps = 112/452 (24%)

Query: 15  LVRVFFNQLHSLISPADFEENQAQEIKFERSISLDKFSKLDINEHHQEAQSTVGYSPLLK 74
           ++RVFF ++ +L + +    N+ QE +     S+  FS                 SPL  
Sbjct: 228 ILRVFFREIQTLFTSSGSGGNRVQEAQ-----SIGIFS-----------------SPLQV 265

Query: 75  KETSTLNNVSSNQKEEMSENSAFQE-EQLNFKNERMNRGDDAMKED----KGKAGGTASA 129
            E + L+ V  N KE MS+NSAF    Q N + E  N GDD  ++     KG A  T   
Sbjct: 266 NEPAELDKVG-NLKEGMSDNSAFPSIGQHNTRVENTNLGDDLNRQHQVGGKGMASNTVLR 324

Query: 130 VSREMDRDFQNVETSGSDTSSTRGKNFVGQMGNGDFAKSSDLVKENGR---QGVQEDGKV 186
             R+ D+D QN ETSGSDTSS +GKN +    NG+    S+ +K  G+     + ED KV
Sbjct: 325 GVRDTDKDAQNAETSGSDTSSAKGKNVLNHADNGE----SESMKRLGKIVVDEIPEDEKV 380

Query: 187 GTIQFEEKPR------------------------------------KRKRTIMNDYQMSL 210
            ++Q  ++ R                                    K+++TIMND  + L
Sbjct: 381 ESLQKRKRKRTMVNDKLVELMENALVDEPDMQRNEPEDEKVGPLQKKKRKTIMNDKMVEL 440

Query: 211 IEKALVDEPDMQRNSASIQRWADKLSIHGSEVTFSQLKNWLNNRKARLARAGKDVRAPVE 270
           +E+AL+DEP+MQRN+AS+Q WA+KLS HGSEVT SQLKNWLNNRKA+LAR  KD   P +
Sbjct: 441 MERALLDEPEMQRNAASLQSWAEKLSHHGSEVTPSQLKNWLNNRKAKLARTSKDSSTPDK 500

Query: 271 FDSAHSVKQGMSTHSHDSPESRGEDNAPSGARLVPSTSRIGTSENAETSLAEFVGIGAAE 330
                  ++G    S DSP +                                  +G  E
Sbjct: 501 -------QKGPVRVSSDSPNN----------------------------------LGPLE 519

Query: 331 FVQCKPGQYVVLVDKQGEEIGKAKVYQVQGKWYGKNLEESETCVVDVTELKADRWVRLPY 390
            V+C  GQ  V+V+ +GEEIGK KV QV GKWYGK+LEE    V+DV EL AD+ ++LP+
Sbjct: 520 VVRCNVGQSAVVVNVRGEEIGKGKVVQVNGKWYGKSLEELGVYVMDVYELYADKGMKLPF 579

Query: 391 PSEATGTSFSEAETKLGVMRVLWDSNKIFMFR 422
           PSE  GTSF+EAE KLG MRVLWDS +I + +
Sbjct: 580 PSEIYGTSFAEAERKLGAMRVLWDSRRILVLQ 611