Jatropha Genome Database

JcCB0022161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0022161.10 - phase: 0 /pseudo
         (760 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g087350.1 Prefoldin; SMCs flexible hinge chr08_pseudo...    91   2e-18
IMGA|Medtr5g037440.1 SMC protein, N-terminal; AAA ATPase chr05_p...    58   2e-08
IMGA|Medtr3g040140.1 SMC protein, N-terminal chr03_pseudomolecul...    57   3e-08
IMGA|Medtr5g094200.1 condensin complex component SMC3, related c...    49   7e-06

>IMGA|Medtr8g087350.1 Prefoldin; SMCs flexible hinge
           chr08_pseudomolecule_IMGAG_V3 18141018-18153271 E
           EGN_Mt090430 20090702
          Length = 1248

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 206/462 (44%), Gaps = 57/462 (12%)

Query: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60
           ++I+E+ +  FKSYA    V  F   F+A+ G NGSGKSN++D++ FV G    +Q+R  
Sbjct: 14  LFIQEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFG-KRAKQMRLN 72

Query: 61  NLQELVYKQG-QAGITKATVSIVFDN-SDRNRSPLGYEDHSEITVTRQIVVGGRNKYLIN 118
            + EL++       +  A VS+ F    D           ++  +TR       +KY IN
Sbjct: 73  KVSELIHNSSNHQNLDSAGVSVHFQEIVDLEDGTYETVPGTDFVITRVAFRDNSSKYYIN 132

Query: 119 GKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE-------ILSMLEEAAGT 171
            + +  ++V        ++++N  FLI+QG + ++  MKP          L  LE+  GT
Sbjct: 133 NRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKSQGPHDEGFLEYLEDIIGT 192

Query: 172 RMYETKKDAALKTLE---KKQSKVDEINKLLDQE-------------------ILPALEK 209
             Y  K D + K LE   +++S V ++ KL ++E                   +L  L  
Sbjct: 193 NKYVEKIDESYKQLESLNERRSGVVQMVKLSEKERDSLEACKIVDVKNEAEAYMLKELSL 252

Query: 210 LR-KERIQYMQWANGNAELDRLKRFCIAYE---YVQAEEIREN--TIGEVEQIKAKI--- 260
           L+ +E+   +   +   ++D L+    + E     + ++I+EN   + E+E    K    
Sbjct: 253 LKWQEKATTLAVDDTGGKMDELQVGVASLEENLKAERDKIQENKQILKELETKHNKYIQI 312

Query: 261 -SEIDGDTEKTQVEIQEMETKISKLTAEKEASMGGEVKTLSDKVHVLSQDLVREVSVLHN 319
             E+D D  K + E +E E +  K   E    M  ++K L DK    S  +   V    N
Sbjct: 313 QEELDNDMRKCKEEFKEFERQDVKFR-EDYKHMNQKIKKLEDKAEKDSSKIEALVKEGEN 371

Query: 320 KEDTLRGENENAEKIVDGIEDLKQSVEEKATAVRKSEEGAADLEKRVKELSK---ALEEH 376
             D +    +N  K+   + D ++ +EE       +E    + EK   EL+K    LE  
Sbjct: 372 SNDMIPKLEDNIPKLQKLLTDEEKVLEE------ITESSKVETEKFRSELAKFRSELEPW 425

Query: 377 EKD---YQGVLAGKSSGNEEKCLEDQLAEAKVAVGNAETELK 415
           EKD   ++G L   SS  E K L ++   A+ A   A+ ++K
Sbjct: 426 EKDLIEHKGKLEVASS--EAKLLNEKHEGAREAFKGAQNQMK 465


>IMGA|Medtr5g037440.1 SMC protein, N-terminal; AAA ATPase
           chr05_pseudomolecule_IMGAG_V3 15736814-15732893 H
           EGN_Mt090430 20090702
          Length = 438

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 141/316 (44%), Gaps = 51/316 (16%)

Query: 3   IKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQV--RAA 60
           I EI L  F ++       G  P  N + G NGSGKS+++ +I   LG+    Q+  RA 
Sbjct: 25  IIEIELHNFMTFDYLKCKPG--PRLNLVIGPNGSGKSSLVCAI--ALGLCGEPQLLGRAT 80

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
            + E V +  ++G  K T+              G      IT+ R+I +  ++++ +NG 
Sbjct: 81  CVAEFVKEGKESGHIKITLR-------------GEHIGDHITIMRKINISRKSEWFLNGN 127

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG-TRMYE---- 175
           +     V        + VNN    + Q R+ +   + P ++L   E+A G T++ E    
Sbjct: 128 IVSKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDTQLPEQHRA 187

Query: 176 -TKKDAALK----TLEKKQSKVDEI---NKLLDQEILPALEKLRKERIQYMQWANGNAEL 227
              K  ALK    +LEK +  ++++   N  L++++         ER++        A+L
Sbjct: 188 LIDKSRALKHVELSLEKNEGTLNQLKERNAELEKDV---------ERVRQRDELRAKAKL 238

Query: 228 DRLKRFCIAYEYVQAEEIRENTIGEVEQIKAKISEIDGDTEKTQVEIQEMETKISKLTAE 287
              K   + Y+  QA E RE    E E+  AK      ++EK    + E++  I K   E
Sbjct: 239 MEKKLPWLKYDMKQA-EYRE--AKEREKTAAK------ESEKANKLLNELKEPIKKQNDE 289

Query: 288 KEASMGGEVKTLSDKV 303
           K+A +  + + +SD++
Sbjct: 290 KDA-LAEKWRKVSDRL 304


>IMGA|Medtr3g040140.1 SMC protein, N-terminal
           chr03_pseudomolecule_IMGAG_V3 10913496-10917134 H
           EGN_Mt090430 20090702
          Length = 294

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 19/170 (11%)

Query: 3   IKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQV--RAA 60
           I EI L  F ++       G  P  N + G NGSGKS+++ +I   LG+    Q+  RA 
Sbjct: 24  ILEIELHNFMTFDYLKCKPG--PRLNLVIGPNGSGKSSLVCAI--ALGLCGEPQLLGRAT 79

Query: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYLINGK 120
           ++Q  V +   +G  K T+              G     +IT+ R+I    ++++++NG 
Sbjct: 80  SIQAFVKRGEDSGHIKITLR-------------GDHKEEQITIMRKINTSNKSEWVLNGN 126

Query: 121 LAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAG 170
           +     V        + VNN    + Q R+ +   + P ++L   E+A G
Sbjct: 127 IVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVG 176


>IMGA|Medtr5g094200.1 condensin complex component SMC3, related
           chr05_pseudomolecule_IMGAG_V3 37150820-37154724 H
           EGN_Mt090430 20090702
          Length = 340

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 93  LGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITK 152
           +GY    E    R+ +   +++Y ++GK      + + F     + +NP++++ QG+I  
Sbjct: 2   VGYTVDKEEVHLRRTISSKKDEYFLDGK-----HITDEF--AGFSRSNPYYVVQQGKIAS 54

Query: 153 VLNMKPPEILSMLEEAAGTRMYETKKDAALKTLE 186
           +  MK  E L +L+E  GTR+YE ++  +LK ++
Sbjct: 55  LTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ 88