Jatropha Genome Database

JcCB0019891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019891.20 + phase: 1 /pseudo/partial
         (69 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g043620.1 Photosystem I psaA and psaB chr03_pseudomol...    92   5e-20

>IMGA|Medtr3g043620.1 Photosystem I psaA and psaB
            chr03_pseudomolecule_IMGAG_V3 11980106-11984680 E
            EGN_Mt090430 20090702
          Length = 1481

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 57/75 (76%), Gaps = 7/75 (9%)

Query: 2    MLAFGIPEKQILIELIFDQWL*SAFGKTSY------ASTNSAATNVG*SIRLPG*LN-VN 54
            MLAFG PEKQILIE IF QW+ SA GKTSY      +STNS A + G SI LPG LN +N
Sbjct: 1190 MLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTNSPALSAGRSIWLPGWLNAIN 1249

Query: 55   ENSNSLFLTIGPGDF 69
            ENSNSLFLTIGPGDF
Sbjct: 1250 ENSNSLFLTIGPGDF 1264