Jatropha Genome Database

JcCB0019451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0019451.10 + phase: 0 
         (188 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g073130.1 Histone deacetylase chr04_pseudomolecule_IM...   326   4e-90
IMGA|Medtr3g114600.1 Histone deacetylase superfamily chr03_pseud...   252   9e-68
IMGA|AC151525_27.1 Histone deacetylase AC151525.18 138824-145575...   250   2e-67
IMGA|Medtr3g164120.1 Histone deacetylase superfamily chr03_pseud...   248   1e-66
IMGA|Medtr3g114640.1 Histone deacetylase superfamily chr03_pseud...   202   1e-52
IMGA|Medtr4g073130.2 Histone deacetylase superfamily chr04_pseud...   179   9e-46
IMGA|Medtr1g020580.1 Histone deacetylase superfamily chr01_pseud...    52   1e-07
IMGA|Medtr2g105140.1 Histone deacetylase superfamily chr02_pseud...    48   2e-06

>IMGA|Medtr4g073130.1 Histone deacetylase
           chr04_pseudomolecule_IMGAG_V3 14366558-14356964 E
           EGN_Mt090430 20090702
          Length = 405

 Score =  326 bits (835), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 151/163 (92%), Positives = 161/163 (98%)

Query: 26  MKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFAN 85
           MKPHRLCMTHHLVLSY+LHKKME+YRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF++
Sbjct: 1   MKPHRLCMTHHLVLSYDLHKKMEVYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFSD 60

Query: 86  ELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASG 145
           EL +YNLGEDCPVF+NLFEFCQ+YAGGTIDAARRLNN+LCDIAINWAGGLHHAKKCEASG
Sbjct: 61  ELAKYNLGEDCPVFDNLFEFCQMYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCEASG 120

Query: 146 FCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFFFTDR 188
           FCYINDLVLGILELLK+H RVLYIDIDVHHGDGVEEAF+FTDR
Sbjct: 121 FCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDR 163


>IMGA|Medtr3g114600.1 Histone deacetylase superfamily
           chr03_pseudomolecule_IMGAG_V3 29075878-29069797 E
           EGN_Mt090430 20090702
          Length = 471

 Score =  252 bits (643), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 143/189 (75%), Gaps = 4/189 (2%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K R+ YFY+  +G  Y+G  HPMKPHR+ M H+L++ Y LH++M+I RP  A P ++ +F
Sbjct: 20  KRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIIHYSLHRRMQINRPFAAAPEDIRRF 79

Query: 64  HSADYVEFLHRITP----DTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARR 119
           HS DYVEFL  ++P    D  H    +L R+N+GEDCPVF+ LF FCQ  AGG+I AA R
Sbjct: 80  HSDDYVEFLSSVSPEIVSDNSHSHYRQLKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVR 139

Query: 120 LNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGV 179
           LN    DIAINWAGGLHHAKK EASGFCY+ND+VLGILELLK H RVLY+DIDVHHGDGV
Sbjct: 140 LNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGV 199

Query: 180 EEAFFFTDR 188
           EEAF+ TDR
Sbjct: 200 EEAFYTTDR 208


>IMGA|AC151525_27.1 Histone deacetylase AC151525.18 138824-145575 E
           EGN_Mt090430 20090702
          Length = 584

 Score =  250 bits (639), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 144/185 (77%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K +I+YFYD +VG  Y+G  HPMKPHR+ MTH L+  Y L + M++ +P  A   +L +F
Sbjct: 109 KRKISYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVVKPTAAKDRDLCKF 168

Query: 64  HSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQ 123
           H+ DYV FL  ITP+TQ     +L R+N+GEDCPVF+ L+ FCQ YAGG++  A +LN+ 
Sbjct: 169 HADDYVAFLRGITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGALKLNHG 228

Query: 124 LCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAF 183
           +CDIAINW+GGLHHAKKCEASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAF
Sbjct: 229 ICDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKIHERVLYVDIDIHHGDGVEEAF 288

Query: 184 FFTDR 188
           + TDR
Sbjct: 289 YTTDR 293


>IMGA|Medtr3g164120.1 Histone deacetylase superfamily
           chr03_pseudomolecule_IMGAG_V3 43246462-43252025 E
           EGN_Mt090430 20090702
          Length = 446

 Score =  248 bits (634), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 143/185 (77%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K ++ YFYD +VG  Y+G  HPMKPHR+ MTH L+  Y L + M++++P  A   +L +F
Sbjct: 17  KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRF 76

Query: 64  HSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQ 123
           H+ DYV FL  ITP+TQ     +L R+N+GEDCPVF+ L+ FCQ YAGG++  A +LN+ 
Sbjct: 77  HADDYVSFLRSITPETQQDHMRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHD 136

Query: 124 LCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAF 183
            CDIA+NWAGGLHHAKKCEASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAF
Sbjct: 137 QCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAF 196

Query: 184 FFTDR 188
           + TDR
Sbjct: 197 YTTDR 201


>IMGA|Medtr3g114640.1 Histone deacetylase superfamily
           chr03_pseudomolecule_IMGAG_V3 29081873-29081166 E
           EGN_Mt090430 20090702
          Length = 215

 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 123/175 (70%), Gaps = 5/175 (2%)

Query: 4   KDRIAYFYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQF 63
           K R+ YFY+  +G  Y+G  HPMKPHR+ M H+L++ Y LH++M+I  P  A P ++ +F
Sbjct: 25  KRRVTYFYEPSIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMQINLPFAAAPEDICRF 84

Query: 64  HSADYVEFLHRITP----DTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARR 119
           HS DYVEFL  ++P    D  H     L R+N+G+DCPVF+ LF FCQ  AGG+I  A R
Sbjct: 85  HSDDYVEFLSSVSPEIVKDNSHPHNRLLKRFNVGDDCPVFDGLFPFCQASAGGSIGCAAR 144

Query: 120 LNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVH 174
           LN    DIAINWAGGLHHAKK EASGFCY+ND+VLGILELLK H RVL+    V+
Sbjct: 145 LNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKAH-RVLFFIFSVY 198


>IMGA|Medtr4g073130.2 Histone deacetylase superfamily
           chr04_pseudomolecule_IMGAG_V3 14366558-14361195 E
           EGN_Mt090430 20090702
          Length = 97

 Score =  179 bits (453), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 81/89 (91%), Positives = 88/89 (98%)

Query: 26  MKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFAN 85
           MKPHRLCMTHHLVLSY+LHKKME+YRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF++
Sbjct: 1   MKPHRLCMTHHLVLSYDLHKKMEVYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFSD 60

Query: 86  ELVRYNLGEDCPVFENLFEFCQIYAGGTI 114
           EL +YNLGEDCPVF+NLFEFCQ+YAGGTI
Sbjct: 61  ELAKYNLGEDCPVFDNLFEFCQMYAGGTI 89


>IMGA|Medtr1g020580.1 Histone deacetylase superfamily
           chr01_pseudomolecule_IMGAG_V3 4528083-4533826 F
           EGN_Mt090430 20090702
          Length = 350

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 21/174 (12%)

Query: 24  HPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVELAQFHSADYVEFLHR-------IT 76
           HP    +       ++S+ +  K  I  P +A   +L   HS  Y+  L         I 
Sbjct: 52  HPFDSSKWGRICKFLISFGVLDKNRIVEPLEASKDDLLVVHSESYLNSLKESSNVAKIIE 111

Query: 77  PDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLH 136
                LF N LV+  +         LF F +   GGTI AA+    +    AIN  GG H
Sbjct: 112 VPPVALFPNCLVQRKV---------LFPFRK-QVGGTILAAKLAKER--GWAINVGGGFH 159

Query: 137 HAKKCEASGFCYINDLVLGI-LELLKYH-ARVLYIDIDVHHGDGVEEAFFFTDR 188
           H       GFC   D+ L I    ++ + +RV+ ID+D H G+G E  F   +R
Sbjct: 160 HCSAENGGGFCAYADISLCIHFAFVQLNISRVIIIDLDAHQGNGHEMDFADDNR 213


>IMGA|Medtr2g105140.1 Histone deacetylase superfamily
           chr02_pseudomolecule_IMGAG_V3 24992741-24995720 F
           EGN_Mt090430 20090702
          Length = 386

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 15/134 (11%)

Query: 59  ELAQFHSADYVEFLHRITPDTQHLFANELVRYNLGEDCPVFENLFEFCQIYAGGTIDAAR 118
           EL  FH+ +Y+  L +         A++  R  L     +    ++   + AG T+ + +
Sbjct: 85  ELLSFHTPEYINELVK---------ADKKGRKVLCAGTFLNPGSWDAALLAAGTTLSSMK 135

Query: 119 RLNNQLCDIA---INWAGGLHHAKKCEASGFCYINDLVLGI-LELLKYHARVLYIDIDVH 174
            L +    +A   +   G  HHA+  +A G+C++N+  L + L L     +V  IDIDVH
Sbjct: 136 HLLDGHGKVAYALVRPPG--HHAQPSQADGYCFLNNAGLAVQLALDSGCKKVAVIDIDVH 193

Query: 175 HGDGVEEAFFFTDR 188
           +G+G  E F+ +++
Sbjct: 194 YGNGTAEGFYSSNK 207