Jatropha Genome Database
- JcCB0018541.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0018541.10 + phase: 1 /partial
(178 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g040380.1 GH3 auxin-responsive promoter chr08_pseudom... 164 3e-41
IMGA|Medtr5g016310.1 GH3 auxin-responsive promoter chr05_pseudom... 142 7e-35
IMGA|Medtr5g016320.1 GH3 auxin-responsive promoter chr05_pseudom... 140 5e-34
IMGA|AC229702_10.1 GH3 auxin-responsive promoter AC229702.6 9316... 137 2e-33
IMGA|Medtr2g096120.1 GH3 auxin-responsive promoter chr02_pseudom... 132 1e-31
IMGA|Medtr3g026280.1 GH3 auxin-responsive promoter chr03_pseudom... 52 1e-07
>IMGA|Medtr8g040380.1 GH3 auxin-responsive promoter
chr08_pseudomolecule_IMGAG_V3 8648867-8649948 E
EGN_Mt090430 20090702
Length = 291
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 102/157 (64%), Gaps = 29/157 (18%)
Query: 1 LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
LYRYRLGDVV I+GF NST +LKF+ R L
Sbjct: 142 LYRYRLGDVVNIMGFSNSTLKLKFIRRKEEL----------------------------- 172
Query: 61 EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEILKECCNCLDRSFLDAGYVSSRKINAIGP 120
EV++F+S VDLS EPG+YVIFWEI+ E ++E+L +CCNCLD+SF D Y SRK N IG
Sbjct: 173 EVIEFTSHVDLSNEPGNYVIFWEISGEASEELLSKCCNCLDKSFTDPSYSFSRKANTIGA 232
Query: 121 LELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCVAPT 157
LELRVV +GTFQKILDHYLGLGT +SQ+KT R + T
Sbjct: 233 LELRVVGKGTFQKILDHYLGLGTSISQYKTARYLGLT 269
>IMGA|Medtr5g016310.1 GH3 auxin-responsive promoter
chr05_pseudomolecule_IMGAG_V3 5684990-5686351 E
EGN_Mt090430 20090702
Length = 387
Score = 142 bits (359), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 107/163 (65%), Gaps = 7/163 (4%)
Query: 1 LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
L RY++GD++++ GFHNS P+ KFV R ++LL+I+ DK E +L A++
Sbjct: 193 LCRYKVGDILQVTGFHNSNPQFKFVRRKNVLLSIDSDKTDESELQKAIENASALLKEFKT 252
Query: 61 EVVDFSSLVDLSTEPGHYVIFWEI-----NKEPTDEILKECCNCLDRSFLDAGYVSSRKI 115
VV+++S + + PGHYVI+WE+ + PTDE+L +CC ++ S L++ Y R
Sbjct: 253 SVVEYTSFAETKSIPGHYVIYWELLMKDSSCPPTDEVLNQCCLVMEES-LNSVYRQGRVA 311
Query: 116 -NAIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCVAPT 157
N+IGPLE+RVV+ GTF+ ++D+Y+ G ++Q+K PRCV+ T
Sbjct: 312 DNSIGPLEIRVVKNGTFEDLMDYYISCGASINQYKVPRCVSLT 354
>IMGA|Medtr5g016320.1 GH3 auxin-responsive promoter
chr05_pseudomolecule_IMGAG_V3 5695839-5693541 F
EGN_Mt090430 20090702
Length = 600
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 7/159 (4%)
Query: 3 RYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXIEV 62
RYR+GD++++ GFHNS P+ KFV R ++LL+I+ DK E +L A++ V
Sbjct: 413 RYRVGDILQVNGFHNSDPQFKFVRRKNVLLSIDSDKTDESELQKAIENASALLKEFKTSV 472
Query: 63 VDFSSLVDLSTEPGHYVIFWEI-----NKEPTDEILKECCNCLDRSFLDAGYVSSRKI-N 116
V+++S + + PGHYVI+WE+ + PTDE+L +CC ++ S L++ Y R N
Sbjct: 473 VEYTSFAETKSIPGHYVIYWELLMKDSSCPPTDEVLNQCCLVMEES-LNSVYRQGRVADN 531
Query: 117 AIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCVA 155
+IGPLE+RVV+ GTF++++D+ + G ++Q+K PRCV+
Sbjct: 532 SIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVS 570
>IMGA|AC229702_10.1 GH3 auxin-responsive promoter AC229702.6
93167-91240 E EGN_Mt090430 20090702
Length = 506
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Query: 1 LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
LYRYR+GD++++ GF N P+ F+CR +++L+I+ DK E +L AV +
Sbjct: 314 LYRYRVGDILRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQTAVKNGSNHLSHYNV 373
Query: 61 EVVDFSSLVDLSTEPGHYVIFWEI-----NKEP-TDEILKECCNCLDRSFLDAGYVSSRK 114
+ D++S D ST PGHY+++WEI N P D + +ECC ++ S L++ Y R
Sbjct: 374 SLTDYTSCADASTIPGHYILYWEIIFDEQNPIPIPDSVFEECCFAVEDS-LNSVYRQGRV 432
Query: 115 INAIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
+IGPLE++VV GTF K++D L G ++Q+KTPRCV
Sbjct: 433 TESIGPLEIKVVENGTFDKVMDFALSQGASINQYKTPRCV 472
>IMGA|Medtr2g096120.1 GH3 auxin-responsive promoter
chr02_pseudomolecule_IMGAG_V3 22168384-22171476 E
EGN_Mt090430 20090702
Length = 607
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 102/159 (64%), Gaps = 6/159 (3%)
Query: 1 LYRYRLGDVVKIVGFHNSTPELKFVCRTSLLLTINIDKNSEKDLHLAVDXXXXXXXXXXI 60
LYRY++GDV+K+ GF N P+ FVCR +++L+I DK E +L A+
Sbjct: 415 LYRYKVGDVLKVTGFKNKAPQFSFVCRKNVVLSIESDKTDEVELQNAMKNAVTHLAPFEA 474
Query: 61 EVVDFSSLVDLSTEPGHYVIFWEINKEPTDEI----LKECCNCLDRSFLDAGYVSSR-KI 115
+V +++S D +T PGHYV++WE+N + + +I ++CC ++ S L++ Y R
Sbjct: 475 DVAEYTSYADTTTIPGHYVLYWELNLKGSTKIPHSVYEDCCLTIEES-LNSVYRQGRVSD 533
Query: 116 NAIGPLELRVVRRGTFQKILDHYLGLGTVVSQFKTPRCV 154
+IGPLE+++V +GTF K++D+ + LG ++Q+KTPRCV
Sbjct: 534 KSIGPLEIKIVEQGTFDKLMDYAINLGASINQYKTPRCV 572
>IMGA|Medtr3g026280.1 GH3 auxin-responsive promoter
chr03_pseudomolecule_IMGAG_V3 7038192-7036421 H
EGN_Mt090430 20090702
Length = 213
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 87 EPTD-EILKECCNCLDRSFLDAGYVSSRKIN-AIGPLELRVVRRGTFQKILDHYLGLGTV 144
+P D +L+ CC ++ LD Y R + ++GPLE+RVV GTF+ ++D ++ G
Sbjct: 117 DPLDPNVLQGCCIAVEEE-LDYVYRRCRTNDKSVGPLEIRVVEPGTFEALMDLFITKGAS 175
Query: 145 VSQFKTPRCV 154
++Q+KTPRC+
Sbjct: 176 INQYKTPRCI 185