Jatropha Genome Database

JcCB0018351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0018351.20 + phase: 0 /partial/short
         (49 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g045870.1 Protein of unknown function DUF1336 chr05_p...    87   3e-18
IMGA|Medtr7g011080.1 Protein of unknown function DUF1336 chr07_p...    64   2e-11
IMGA|Medtr6g010060.1 Protein of unknown function DUF1336 chr06_p...    49   5e-07
IMGA|Medtr5g038290.1 Protein of unknown function DUF1336 chr05_p...    49   5e-07

>IMGA|Medtr5g045870.1 Protein of unknown function DUF1336
           chr05_pseudomolecule_IMGAG_V3 19241792-19245838 E
           EGN_Mt090430 20090702
          Length = 487

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/48 (81%), Positives = 43/48 (89%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVTTRD 48
           K+GI +VGLTIQAQK EELPEQVLCC+RLNKIDFVNHGQIPTI+   D
Sbjct: 439 KNGILDVGLTIQAQKEEELPEQVLCCLRLNKIDFVNHGQIPTIMALED 486


>IMGA|Medtr7g011080.1 Protein of unknown function DUF1336
           chr07_pseudomolecule_IMGAG_V3 2567940-2572563 H
           EGN_Mt090430 20090702
          Length = 552

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 1   KHGIANVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQIPTIVT 45
           K GI ++GLTIQAQK EELPE+VLCC+RLNK+D   + Q P ++T
Sbjct: 504 KDGILDLGLTIQAQKQEELPEKVLCCIRLNKVDLGENDQTPMLMT 548


>IMGA|Medtr6g010060.1 Protein of unknown function DUF1336
           chr06_pseudomolecule_IMGAG_V3 1902640-1907020 E
           EGN_Mt090430 20090702
          Length = 442

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 6   NVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           + GLTIQ  KPE+LPE +LC +RLNKID     QI
Sbjct: 404 DFGLTIQGNKPEDLPEHLLCAIRLNKIDHSTFNQI 438


>IMGA|Medtr5g038290.1 Protein of unknown function DUF1336
           chr05_pseudomolecule_IMGAG_V3 16177604-16181767 E
           EGN_Mt090430 20090702
          Length = 487

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 2/35 (5%)

Query: 6   NVGLTIQAQKPEELPEQVLCCVRLNKIDFVNHGQI 40
           ++GLTIQA   EELPEQVLCC+RLN ID +N+ Q+
Sbjct: 448 DIGLTIQA--IEELPEQVLCCIRLNGIDHLNYHQL 480