Jatropha Genome Database

JcCB0017941.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017941.20 - phase: 0 
         (115 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g143500.1 Ribosomal protein L18P/L5E chr01_pseudomole...   181   8e-47
IMGA|Medtr4g033440.1 Ribosomal protein L18P/L5E chr04_pseudomole...    74   3e-14
IMGA|Medtr5g023290.1 hypothetical protein chr05_pseudomolecule_I...    59   8e-10
IMGA|Medtr5g006380.1 Ribosomal protein L18P/L5E chr05_pseudomole...    57   3e-09
IMGA|Medtr2g052360.1 Ribosomal protein L18 chr02_pseudomolecule_...    52   1e-07
IMGA|Medtr7g096680.1 Ribosomal protein L18P/L5E chr07_pseudomole...    51   1e-07

>IMGA|Medtr1g143500.1 Ribosomal protein L18P/L5E
           chr01_pseudomolecule_IMGAG_V3 31692768-31690734 E
           EGN_Mt090430 20090702
          Length = 114

 Score =  181 bits (459), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 99/103 (96%)

Query: 13  VTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAAAAKIGK 72
           +T+YLKPYVLKMHFTNKYVSAQVIH+PTATVA SASSQEKALRSS+E TRDVAAAAKIGK
Sbjct: 12  LTQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGK 71

Query: 73  ILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKLL 115
           +LAERL +KDIPAVSV LKREQ+YHGKVKAV+D++R++GV+LL
Sbjct: 72  LLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114


>IMGA|Medtr4g033440.1 Ribosomal protein L18P/L5E
           chr04_pseudomolecule_IMGAG_V3 8260564-8264579 F
           EGN_Mt090430 20090702
          Length = 199

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 66/109 (60%)

Query: 4   PPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD 63
           P    W  R   Y++P++L + F+ K+V A+V H  T+ V C A++  K LR+S+ +  D
Sbjct: 88  PSRKSWKRRTDMYMRPFLLDIFFSKKFVHAKVTHRGTSKVICVATTNAKDLRNSLPSLID 147

Query: 64  VAAAAKIGKILAERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGV 112
             A   IG+++AER    D+ A++   +++++  G++  ++D V+++G+
Sbjct: 148 PEACRVIGRLIAERSKEADVYAMAYEPRKKERIEGRLGIIIDTVKENGI 196


>IMGA|Medtr5g023290.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 9159893-9161413 E
          EGN_Mt090430 20090702
          Length = 57

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 1  MVIPPPVKWPPRVTEYLKPYVLKMHFTNKYVSAQVIHSPTATVACSASS 49
          +VIPP V+  P++T++LKPYV KM+FTNK+VS QVI +P ATVA S SS
Sbjct: 10 LVIPPSVR-APKITKFLKPYVPKMYFTNKHVSVQVILTPPATVASSPSS 57


>IMGA|Medtr5g006380.1 Ribosomal protein L18P/L5E
           chr05_pseudomolecule_IMGAG_V3 680898-681968 H
           EGN_Mt090430 20090702
          Length = 356

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 57/99 (57%)

Query: 16  YLKPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRDVAAAAKIGKILA 75
           Y +P+ L ++ +   V A ++H  T+ V   A S  K L+  + +T++    A +GKILA
Sbjct: 240 YHEPFCLDIYISKASVRACIVHRVTSKVVVVAHSISKDLKFDLTSTKNKTTCAAVGKILA 299

Query: 76  ERLLVKDIPAVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
           +R L  DI  +    ++ ++  GK++ V++++ DSG+ +
Sbjct: 300 QRALADDIHDIIYTPRKGERVEGKLQIVLNSIIDSGINV 338


>IMGA|Medtr2g052360.1 Ribosomal protein L18
           chr02_pseudomolecule_IMGAG_V3 14190120-14186309 E
           EGN_Mt090430 20090702
          Length = 166

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 27  TNKYVSAQVIHSPTATVACSASSQEKALRSSMENTRD--VAAAAKIGKILAERLLVKDIP 84
           +NK++  QVI         SAS+ +KA+   +  T    +  A ++G+I+A+  L K I 
Sbjct: 78  SNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGEIIAKSCLEKGIT 137

Query: 85  AVSVFLKREQKYHGKVKAVVDAVRDSGVKL 114
            V VF +    YHG+VKA+ DA R+ G++ 
Sbjct: 138 KV-VFDRGGYPYHGRVKAIADAAREHGLEF 166


>IMGA|Medtr7g096680.1 Ribosomal protein L18P/L5E
           chr07_pseudomolecule_IMGAG_V3 21687849-21689919 E
           EGN_Mt090430 20090702
          Length = 124

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 64/110 (58%), Gaps = 12/110 (10%)

Query: 18  KPYVLKMHFTNKYVSAQVIHSPTATVACSASSQEKALRSSMENTR--DVAAAAKIGKILA 75
           K YVL++  + KY++A V+   +  +  ++S+ E  ++ S+E  R  +  AAA +G++LA
Sbjct: 5   KRYVLRLFISIKYITANVVDRNSGRIVATSSTAEHDIKQSLECGRSCNAKAAAVVGEVLA 64

Query: 76  ERLLVKDIP-----AVSVFLKREQKYHG-----KVKAVVDAVRDSGVKLL 115
            RL V+ +       + V + +E +  G     K+ AVV+A++ +GVKL+
Sbjct: 65  RRLKVEGLNEGEGRGIHVNVNKEIEKKGFKSQTKILAVVNALKYNGVKLV 114