Jatropha Genome Database

JcCB0017431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0017431.10 - phase: 0 
         (540 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g087830.1 ELM2; AT-rich interaction region chr07_pseu...   136   2e-32
IMGA|Medtr8g031750.1 ELM2; AT-rich interaction region; Homeodoma...   105   6e-23

>IMGA|Medtr7g087830.1 ELM2; AT-rich interaction region
           chr07_pseudomolecule_IMGAG_V3 18924751-18920624 E
           EGN_Mt090430 20090702
          Length = 600

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 28/206 (13%)

Query: 128 SYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEER 187
           S LD  P   +PLGPNHQA +P W G                            + ++ +
Sbjct: 377 SILDAPPTVNIPLGPNHQAEVPEWTG--------------------------TTHKSDSK 410

Query: 188 MMGTCIMPMPDAESSENKNNEAGNGRTDCC-CLDEGSVRCVRQHVMEAREKLKNSLGYEK 246
            +GT I P+   +S   +    G GR D C C  +GSV CVR H+ E   KLK  +G   
Sbjct: 411 WLGTQIWPLQIVKSKLLEGEPVGKGRQDSCRCQVQGSVECVRFHIAEKSAKLKLEIGVA- 469

Query: 247 FEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFGQNFWKQLSQVFATRSTKEIVSYY 306
           F        GEEV R W+ E+++ F  VV SNPAS  + FW  +   F  +S + +VSYY
Sbjct: 470 FYQWNLDKAGEEVRRCWTAEEEKKFKDVVKSNPASLDRCFWDDIFTTFPKKSRESLVSYY 529

Query: 307 FNVFMLRRRAAQNRSNLLDIDSDDDE 332
           FNVF+L+RR  QNR    +IDSDD+E
Sbjct: 530 FNVFLLQRRGYQNRHTPDNIDSDDEE 555


>IMGA|Medtr8g031750.1 ELM2; AT-rich interaction region;
           Homeodomain-like chr08_pseudomolecule_IMGAG_V3
           6837098-6834026 E EGN_Mt090430 20090702
          Length = 593

 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 32/210 (15%)

Query: 128 SYLDRSPRRQVPLGPNHQASIPIWGGHLKNPLEREGSFNPNSYSLVSESNNDIYNDNEER 187
           S   R    ++ +G  +QA +P W G            NP S               + +
Sbjct: 398 SSFSRWASARICVGQKYQAQVPEWTGP-----------NPES---------------DTK 431

Query: 188 MMGTCIMPMPDAESS-ENKNNEAGNGRTDCC-CLDEGSVRCVRQHVMEAREKLKNSLGYE 245
             GT + P+  A S    + +  G GR D C C  +GSV CVR H+ E + K K  LG  
Sbjct: 432 WFGTQVWPLAVANSQFLVERDPIGRGRQDSCGCAVQGSVECVRFHISEKKAKAKLELGV- 490

Query: 246 KFEHLGFYDMGEEVTRKWSEEDQRAFHAVVYSNPASFG-QNFWKQLSQVFATRSTKEIVS 304
            F H  F  +GE+V   W++ED++ F  V+   P   G ++FW  + + F  +S + +VS
Sbjct: 491 AFYHWRFDKVGEDVRNSWTDEDEKRFWEVLQLYPPKRGSEHFWDHIFETFPNKSRETLVS 550

Query: 305 YYFNVFMLRRRAAQNRSNL--LDIDSDDDE 332
           YYFNV++L+R+A   R  L  +DI SDDDE
Sbjct: 551 YYFNVYLLQRKAYHTRHTLGNIDIQSDDDE 580