Jatropha Genome Database
- JcCB0017171.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0017171.10 + phase: 0 /TE
(205 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g010600.1 RNA-binding region RNP-1 (RNA recognition m... 159 8e-40
IMGA|Medtr3g133170.1 Zinc finger, CCHC-type; Nucleotide-binding,... 158 2e-39
IMGA|Medtr8g068270.2 Nucleotide-binding, alpha-beta plait chr08_... 62 2e-10
IMGA|Medtr1g099910.1 Nucleotide-binding, alpha-beta plait chr01_... 62 2e-10
IMGA|Medtr1g099910.2 Nucleotide-binding, alpha-beta plait chr01_... 62 3e-10
IMGA|Medtr1g099910.3 Nucleotide-binding, alpha-beta plait chr01_... 62 3e-10
IMGA|Medtr1g099910.4 Nucleotide-binding, alpha-beta plait chr01_... 62 3e-10
IMGA|Medtr8g068270.1 Nucleotide-binding, alpha-beta plait chr08_... 61 3e-10
IMGA|Medtr3g122850.2 Nucleotide-binding, alpha-beta plait chr03_... 61 4e-10
IMGA|Medtr3g122850.1 Nucleotide-binding, alpha-beta plait chr03_... 61 4e-10
IMGA|AC235022_4.1 Zinc finger, CCHC-type; Nucleotide-binding, al... 57 6e-09
IMGA|AC235022_4.2 Zinc finger, CCHC-type; Nucleotide-binding, al... 57 6e-09
IMGA|Medtr1g108050.1 Linker histone, N-terminal; Nucleotide-bind... 51 5e-07
IMGA|Medtr2g117480.1 Nucleotide-binding, alpha-beta plait chr02_... 50 1e-06
>IMGA|Medtr1g010600.1 RNA-binding region RNP-1 (RNA recognition
motif); Zinc finger, CCHC-type
chr01_pseudomolecule_IMGAG_V3 1809693-1805680 E
EGN_Mt090430 20090702
Length = 190
Score = 159 bits (402), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 87/112 (77%), Gaps = 7/112 (6%)
Query: 1 MSRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDG 60
MSRVYVGNLD+RV+ER+LEDEFR FGVIRSVWVARRPPGYAFIDFDD+RDA+DAI +LDG
Sbjct: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDG 60
Query: 61 KNGWRVELSHN-------SXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
KNGWRVELSHN SDLKCYECGEPGHFAREC
Sbjct: 61 KNGWRVELSHNSRSGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFAREC 112
>IMGA|Medtr3g133170.1 Zinc finger, CCHC-type; Nucleotide-binding,
alpha-beta plait chr03_pseudomolecule_IMGAG_V3
33679060-33676039 E EGN_Mt090430 20090702
Length = 254
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 86/115 (74%), Gaps = 10/115 (8%)
Query: 1 MSRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDG 60
M+RVY+GNLD+R++ER+LED+F FGVIRSVWVARRPPGYAFIDFDD+RDA DAI ELDG
Sbjct: 56 MTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDG 115
Query: 61 KNGWRVELSHNSXX----------XXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
KNGWRVELSHNS SDLKCYECGEPGHFAREC
Sbjct: 116 KNGWRVELSHNSKTGGGGGGRGGGGGGGGRGRSGGGGSDLKCYECGEPGHFAREC 170
>IMGA|Medtr8g068270.2 Nucleotide-binding, alpha-beta plait
chr08_pseudomolecule_IMGAG_V3 13058032-13053351 E
EGN_Mt090430 20090702
Length = 323
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
VYVGNL + ERE+ED F ++G I + V RPPGYAF++F+D +DAEDAI DG
Sbjct: 32 VYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDGY 91
Query: 62 N----GWRVELSH 70
+ RVE +H
Sbjct: 92 DFDGHRLRVEAAH 104
>IMGA|Medtr1g099910.1 Nucleotide-binding, alpha-beta plait
chr01_pseudomolecule_IMGAG_V3 20586916-20580426 E
EGN_Mt090430 20090702
Length = 334
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+YVGNL + RE+ED F ++G I + + +PPGYAF++F+D RDA+DAI+ DG
Sbjct: 40 LYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGY 99
Query: 62 --NGWR--VELSH 70
+G+R VEL+H
Sbjct: 100 DFDGYRLLVELAH 112
>IMGA|Medtr1g099910.2 Nucleotide-binding, alpha-beta plait
chr01_pseudomolecule_IMGAG_V3 20586916-20580426 E
EGN_Mt090430 20090702
Length = 316
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+YVGNL + RE+ED F ++G I + + +PPGYAF++F+D RDA+DAI+ DG
Sbjct: 40 LYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGY 99
Query: 62 --NGWR--VELSH 70
+G+R VEL+H
Sbjct: 100 DFDGYRLLVELAH 112
>IMGA|Medtr1g099910.3 Nucleotide-binding, alpha-beta plait
chr01_pseudomolecule_IMGAG_V3 20586916-20580426 E
EGN_Mt090430 20090702
Length = 315
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+YVGNL + RE+ED F ++G I + + +PPGYAF++F+D RDA+DAI+ DG
Sbjct: 40 LYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGY 99
Query: 62 --NGWR--VELSH 70
+G+R VEL+H
Sbjct: 100 DFDGYRLLVELAH 112
>IMGA|Medtr1g099910.4 Nucleotide-binding, alpha-beta plait
chr01_pseudomolecule_IMGAG_V3 20586916-20580391 E
EGN_Mt090430 20090702
Length = 290
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+YVGNL + RE+ED F ++G I + + +PPGYAF++F+D RDA+DAI+ DG
Sbjct: 40 LYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGY 99
Query: 62 --NGWR--VELSH 70
+G+R VEL+H
Sbjct: 100 DFDGYRLLVELAH 112
>IMGA|Medtr8g068270.1 Nucleotide-binding, alpha-beta plait
chr08_pseudomolecule_IMGAG_V3 13058032-13053351 E
EGN_Mt090430 20090702
Length = 339
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDG 60
VYVGNL + ERE+ED F ++G I + V RPPGYAF++F+D +DAEDAI DG
Sbjct: 32 VYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDG 90
>IMGA|Medtr3g122850.2 Nucleotide-binding, alpha-beta plait
chr03_pseudomolecule_IMGAG_V3 30657852-30662967 E
EGN_Mt090430 20090702
Length = 272
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+YVGNL A + E E+ED F ++G I + V RPP Y F++FD+ RDAEDAI DG
Sbjct: 9 IYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGY 68
Query: 62 N----GWRVELSH 70
N RVEL+H
Sbjct: 69 NFDGCRLRVELAH 81
>IMGA|Medtr3g122850.1 Nucleotide-binding, alpha-beta plait
chr03_pseudomolecule_IMGAG_V3 30658905-30662967 E
EGN_Mt090430 20090702
Length = 273
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+YVGNL A + E E+ED F ++G I + V RPP Y F++FD+ RDAEDAI DG
Sbjct: 9 IYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGY 68
Query: 62 N----GWRVELSH 70
N RVEL+H
Sbjct: 69 NFDGCRLRVELAH 81
>IMGA|AC235022_4.1 Zinc finger, CCHC-type; Nucleotide-binding,
alpha-beta plait AC235022.1 16650-20786 E EGN_Mt090430
20090702
Length = 305
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 2 SRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+R+YVG L +R R+LE F R+G +R V + YAF++F D RDA+DA + LDG+
Sbjct: 11 TRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKH---DYAFVEFRDPRDADDARYNLDGR 67
Query: 62 --NGWR--VELSH-----NSXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
+G R VE + + +C+ CG GH+AR+C
Sbjct: 68 DIDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDC 120
>IMGA|AC235022_4.2 Zinc finger, CCHC-type; Nucleotide-binding,
alpha-beta plait AC235022.1 16650-20786 E EGN_Mt090430
20090702
Length = 306
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 2 SRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
+R+YVG L +R R+LE F R+G +R V + YAF++F D RDA+DA + LDG+
Sbjct: 11 TRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKH---DYAFVEFRDPRDADDARYNLDGR 67
Query: 62 --NGWR--VELSH-----NSXXXXXXXXXXXXXXXSDLKCYECGEPGHFAREC 105
+G R VE + + +C+ CG GH+AR+C
Sbjct: 68 DIDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDC 120
>IMGA|Medtr1g108050.1 Linker histone, N-terminal;
Nucleotide-binding, alpha-beta plait
chr01_pseudomolecule_IMGAG_V3 22939887-22930922 E
EGN_Mt090430 20090702
Length = 375
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 4 VYVGNLDARVTERELEDEFRRFGVIRSV--WVARRPPGYAFIDFDDKRDAEDAIHELDGK 61
VYVGNL + ERE++ F ++G I + V RPP YAF+ F D +A+DAI E DG
Sbjct: 36 VYVGNLPGDIREREVKHLFMKYGHITRIDLKVPPRPPCYAFVVFKDALNADDAICECDGY 95
Query: 62 N----GWRVELSH 70
+ RVE +H
Sbjct: 96 DFDGCRLRVEAAH 108
>IMGA|Medtr2g117480.1 Nucleotide-binding, alpha-beta plait
chr02_pseudomolecule_IMGAG_V3 27620727-27613740 E
EGN_Mt090430 20090702
Length = 428
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 2 SRVYVGNLDARVTERELEDEFRRFGVIRSVWVARRPPGYA--FIDFDDKRDAEDAIHELD 59
+ +YVGNLD V+E EL+ F +FG I SV V PG A F+ F + AE+AI ++
Sbjct: 234 TTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVH---PGKACGFVQFGARASAEEAIQKMQ 290
Query: 60 GK 61
GK
Sbjct: 291 GK 292