Jatropha Genome Database
- JcCB0017001.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0017001.10 - phase: 0 /partial
(397 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g016320.1 GH3 auxin-responsive promoter chr05_pseudom... 303 1e-82
IMGA|Medtr2g096120.1 GH3 auxin-responsive promoter chr02_pseudom... 265 3e-71
IMGA|Medtr8g040380.1 GH3 auxin-responsive promoter chr08_pseudom... 213 2e-55
IMGA|AC229702_10.1 GH3 auxin-responsive promoter AC229702.6 9316... 192 2e-49
IMGA|AC233100_39.1 hypothetical protein AC233100.6 133779-135143... 174 9e-44
IMGA|Medtr5g016310.1 GH3 auxin-responsive promoter chr05_pseudom... 166 1e-41
IMGA|Medtr8g040370.1 GH3 auxin-responsive promoter chr08_pseudom... 166 1e-41
IMGA|Medtr5g016300.1 GH3 auxin-responsive promoter chr05_pseudom... 109 2e-24
IMGA|AC229702_11.1 GH3 auxin-responsive promoter AC229702.6 9600... 77 2e-14
>IMGA|Medtr5g016320.1 GH3 auxin-responsive promoter
chr05_pseudomolecule_IMGAG_V3 5695839-5693541 F
EGN_Mt090430 20090702
Length = 600
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 230/391 (58%), Gaps = 5/391 (1%)
Query: 11 VNKVIEDFEAITKDAERVQFETLKKILEENASAEYLKNLGLNGRTDPESFRDCVPLVTHK 70
+NK +E E +TK+ + VQ L +ILE+NA EYLK GLNG TD E+F+ V ++T++
Sbjct: 20 LNKALEFIEEMTKNTDSVQERVLSEILEQNAETEYLKRFGLNGATDRETFKSKVAVITYE 79
Query: 71 DLEPYIQRIADGDSSPVLTGKPIKTISLTSGTTQGRRKYVPFTEELMDNSLQIFRTSFAF 130
DL P IQRIA+GD SP+L+ PI +SGT+ G RK +P + MD ++
Sbjct: 80 DLLPDIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPTIHQEMDRRQLLYSLLMPV 139
Query: 131 RNRAFP-VGNGKALQFNYGSKPTKTKGGLAAGTATSNLFRNPNYKTAMEAMNSKCCSPDE 189
N+ P + GKAL F + TKT GL A + +++ +K + SPDE
Sbjct: 140 MNQYVPDLDKGKALHFLFIKAETKTPSGLVARPVLTAYYKSEQFKKRPFDPYNVLTSPDE 199
Query: 190 VIFGPDFHQSLYCHLLCGLIFSEEIELVSSTFAHSIVIAFRTFEQVWQELCNDIRDGELS 249
I PD QS+Y +LCGLI E+ V + FA ++ A R + W EL +DI G L+
Sbjct: 200 AILCPDSFQSMYTQMLCGLIMRHEVLRVGAVFASGLLRAIRFLQLNWAELVHDIETGTLN 259
Query: 250 NRVTAPSIRTAMSKVLKPNPELADLIHRKCSGLNNWYGLIPELFPNVKYIYGIMTGSMEP 309
++T PSI+ MSK+LKPNPELA + ++CSG +NW +IP ++PN KY+ I+TG+M
Sbjct: 260 PKITDPSIKQCMSKILKPNPELAKFVTKECSG-DNWERIIPRIWPNTKYLEVIVTGAMAQ 318
Query: 310 YLKKLRHYAGEVPLLCADYGASEGWIAANVNPKLPPELATFAVLPNIGYFEFIPVGDMDE 369
Y+ L +Y+G +P C Y +SE + N+ P P ++ ++PN+GYFEF+P D
Sbjct: 319 YIPTLDYYSGNLPKPCTMYASSECYFGLNLKPMTEPNEVSYTIMPNMGYFEFLPHDDSSP 378
Query: 370 HLYSE---PKPVGLTEVKIGKEYEIIVTNFG 397
S PK V L +V+IGK YE+++T +
Sbjct: 379 ITLSRDSPPKLVDLADVQIGKFYELVITTYS 409
>IMGA|Medtr2g096120.1 GH3 auxin-responsive promoter
chr02_pseudomolecule_IMGAG_V3 22168384-22171476 E
EGN_Mt090430 20090702
Length = 607
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 227/404 (56%), Gaps = 21/404 (5%)
Query: 12 NKVIEDF-EAITKDAERVQFETLKKILEENASAEYLKNLGLNGRTDPESFRDCVPLVTHK 70
NK DF E IT A+ +Q + L +IL NA+ EYL+ GLNG TD E+F+ +P++T++
Sbjct: 13 NKKTLDFIEDITTHADEIQKKVLAEILNRNANVEYLQRHGLNGHTDSETFKKLLPIITYE 72
Query: 71 DLEPYIQRIADGDSSPVLTGKPIKTISLTSGTTQGRRKYVPFTEELMDNSLQIFRTSFAF 130
D++ I IA+GD+SP+LT PI +SGT+ G RK +P TEE ++
Sbjct: 73 DIQNDINLIANGDTSPILTSNPISNFLTSSGTSGGERKLMPATEEEFGRRYLLYSYLMPI 132
Query: 131 RNRAFP-VGNGKALQFNYGSKPTKTKGGLAAGTATSNLFRNPNYKTAMEAMNSKCCSPDE 189
++ P + GK + + +KT GG+ A +N +++ ++ + SP+E
Sbjct: 133 MSQFIPDLEKGKGMYLMFIKNESKTPGGIKASPVLTNYYKSSHFLNRPYDPYTNFTSPNE 192
Query: 190 VIFGPDFHQSLYCHLLCGLIFSEEIELVSSTFAHSIVIAFRTFEQVWQELCNDIRDGELS 249
+ D +QS+Y LLCGLI + E+ V + FA ++ A R E+ W+ LCNDIR G L
Sbjct: 193 TVLCLDSYQSMYSQLLCGLIQNNEVLRVGAVFASGLIRAIRFLEKNWRLLCNDIRTGTLD 252
Query: 250 NRVTAPSIRTAMSKVLKPNPELADLIHRKCSGLNNWYGLIPELFPNVKYIYGIMTGSMEP 309
+T S+R A+ K+LKPN LAD + +C+ +W G+I L+PN KY+ I+TG+M
Sbjct: 253 LLITDDSVREAVMKILKPNKNLADFVEGECNK-GSWQGIITRLWPNTKYVDVIVTGTMSQ 311
Query: 310 YLKKLRHYAGEVPLLCADYGASEGWIAANVNPKLPPELATFAVLPNIGYFEFIPVG---- 365
Y+ L +Y+ +PL+C Y +SE + N+NP P ++ ++P + Y+EF+PV
Sbjct: 312 YIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLSKPCHVSYTLIPTMCYYEFLPVNRSNC 371
Query: 366 ------------DMDEHLYSEPKPVGLTEVKIGKEYEIIVTNFG 397
+ E Y E V L +VK+G+EYE++VT +
Sbjct: 372 EVNGSIPPSTTKSLGEKKYQE--VVDLVDVKLGQEYELVVTTYA 413
>IMGA|Medtr8g040380.1 GH3 auxin-responsive promoter
chr08_pseudomolecule_IMGAG_V3 8648867-8649948 E
EGN_Mt090430 20090702
Length = 291
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/138 (72%), Positives = 117/138 (84%), Gaps = 3/138 (2%)
Query: 261 MSKVLKPNPELADLIHRKCSGLNNWYGLIPELFPNVKYIYGIMTGSMEPYLKKLRHYAGE 320
MSK+LKPNPELAD+IH+KC GLNNWYGL+PELFPN KYIYGIMTGSMEPYL KLRHYAGE
Sbjct: 1 MSKLLKPNPELADIIHKKCLGLNNWYGLLPELFPNAKYIYGIMTGSMEPYLGKLRHYAGE 60
Query: 321 VPLLCADYGASEGWIAANVNPKLPPELATFAVLPNIGYFEFIP---VGDMDEHLYSEPKP 377
+PL+ + YGASEG+IAAN+NPKLP ELAT+ + P GYFEFIP V + L +P P
Sbjct: 61 LPLVTSIYGASEGFIAANINPKLPLELATYVLFPQNGYFEFIPLTQVKNEGTELCVDPHP 120
Query: 378 VGLTEVKIGKEYEIIVTN 395
VGLTEVK+G+EYEI++TN
Sbjct: 121 VGLTEVKVGEEYEIVLTN 138
>IMGA|AC229702_10.1 GH3 auxin-responsive promoter AC229702.6
93167-91240 E EGN_Mt090430 20090702
Length = 506
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 175/311 (56%), Gaps = 10/311 (3%)
Query: 93 IKTISLTSGTTQGRRKYVPFTEELMDNSLQIFRTSFAFRNRAFP-VGNGKALQFNYGSKP 151
+ + +SGT+ G RK +P EE ++ ++ ++ P + GK + F +
Sbjct: 6 VSLLYCSSGTSGGERKLMPTIEEDLERRSLLYSLLMPVMDQYVPNLDKGKGMYFLFTKSE 65
Query: 152 TKTKGGLAAGTATSNLFRNPNYKTAMEAMNSKCCSPDEVIFGPDFHQSLYCHLLCGLIFS 211
KT GL A ++ +++ ++ ++ + SP E I DF+QS+Y +LCGL +
Sbjct: 66 AKTPAGLLARPVLTSYYKSSHF---IKNKTHEITSPIETILCLDFYQSMYSQILCGLYQN 122
Query: 212 EEIELVSSTFAHSIVIAFRTFEQVWQELCNDIRDGELSNRVTAPSIRTAMSKVLKPNPEL 271
E++ V + FA + A + E+ W LCNDI+ G +++ +T +R ++ K+LKPNP+L
Sbjct: 123 EQVLRVGAVFASGFIRAIKFLEKHWVGLCNDIKTGTMNDEITDQGVRESVMKILKPNPKL 182
Query: 272 ADLIHRKCSGLNNWYGLIPELFPNVKYIYGIMTGSMEPYLKKLRHYAGEVPLLCADYGAS 331
AD + +C +W G+I L+PN KY+ I+TG+M Y+ L +Y+ +PL+C Y +S
Sbjct: 183 ADFVELECKK-KSWKGIITRLWPNSKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASS 241
Query: 332 EGWIAANVNPKLPPELATFAVLPNIGYFEFIPVGDMDEHLYS-----EPKPVGLTEVKIG 386
E + N+NP P ++ ++P + YFEF+P+ +D + S + V L +V++G
Sbjct: 242 ECYFGLNLNPLCEPSEVSYTLVPTMAYFEFLPLNKIDANADSISATEQEHLVELVDVELG 301
Query: 387 KEYEIIVTNFG 397
+EYE++VT +
Sbjct: 302 QEYELVVTTYA 312
>IMGA|AC233100_39.1 hypothetical protein AC233100.6 133779-135143 E
EGN_Mt090430 20090702
Length = 244
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 126/230 (54%), Gaps = 72/230 (31%)
Query: 11 VNKVIEDFEAITKDAERVQFETLKKILEENASAEYLKNLGLNGRTDPESFRDCVPLVTHK 70
++K IE+FE ++ DA RVQ TLK+ILE+NA AEYL+NLGLNGRTDPESF
Sbjct: 1 MDKFIEEFEEVSTDAARVQRVTLKRILEDNALAEYLQNLGLNGRTDPESFN--------- 51
Query: 71 DLEPYIQRIADGDSSPVLTGKPIKTISLTSGTTQGRRKYVPFTEELMDNSLQIFRTSFAF 130
I RI DGD+S LT KP+ +SL
Sbjct: 52 -----INRIIDGDASSFLTTKPVTAMSL-------------------------------- 74
Query: 131 RNRAFPV-GNGKALQFNYGSKPTKTKGGLAAGTATSNLFRNPNYKTAMEAMNSKCCSPDE 189
R FP+ NGKAL F YGSK KT+GGL A T T DE
Sbjct: 75 --REFPMMKNGKALHFIYGSKQFKTRGGLVATTIT-----------------------DE 109
Query: 190 VIFGPDFHQSLYCHLLCGLIFSEEIELVSSTFAHSIVIAFRTFEQVWQEL 239
V+F DF QSLYCHLL GLI+ E+++ VSS FAH++V AFRTFEQVW+EL
Sbjct: 110 VVFCSDFFQSLYCHLLSGLIYREDVQSVSSPFAHNVVQAFRTFEQVWEEL 159
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 65/79 (82%), Gaps = 3/79 (3%)
Query: 320 EVPLLCADYGASEGWIAANVNPKLPPELATFAVLPNIGYFEFIPVGDMDEH---LYSEPK 376
E+PL+ + YGASEG+IAANVNPKLPPE AT+AV P GYFEFIP+ ++ L ++P+
Sbjct: 161 ELPLVTSIYGASEGFIAANVNPKLPPEFATYAVFPQNGYFEFIPLTQLNNDGTFLCADPQ 220
Query: 377 PVGLTEVKIGKEYEIIVTN 395
P+GLTEVK+GKEYEI+VTN
Sbjct: 221 PMGLTEVKVGKEYEIVVTN 239
>IMGA|Medtr5g016310.1 GH3 auxin-responsive promoter
chr05_pseudomolecule_IMGAG_V3 5684990-5686351 E
EGN_Mt090430 20090702
Length = 387
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 124/198 (62%), Gaps = 7/198 (3%)
Query: 200 LYCHLLCGLIFSEEIELVSSTFAHSIVIAFRTFEQVWQELCNDIRDGELSNRVTAPSIRT 259
+Y +LCGLI E+ V + FA ++ A + + W +L +DI G L+ ++T PSI+
Sbjct: 1 MYTQMLCGLIMRHEVLRVGAIFASGLLRAIKFLQLNWAQLAHDISTGTLNPKITDPSIKE 60
Query: 260 AMSKVLKPNPELADLIHRKCSGLNNWYGLIPELFPNVKYIYGIMTGSMEPYLKKLRHYAG 319
MSK+LKP+PE A+ I ++CSG NW +IP ++PN KY+ I+TG+M Y+ L +Y+G
Sbjct: 61 CMSKILKPDPEQANFITKECSG-ENWERIIPRIWPNTKYLEVIVTGAMAQYIPTLDYYSG 119
Query: 320 EVPLLCADYGASEGWIAANVNPKLPPELATFAVLPNIGYFEFIPVGDMDEHLYSEPKPVG 379
+P C Y +SE + N+ P P ++ ++PN+GYFEF+P +DE S PK V
Sbjct: 120 NLPKPCTIYASSECYFGLNLKPMTEPNEVSYTIMPNMGYFEFLP---LDE---SPPKLVD 173
Query: 380 LTEVKIGKEYEIIVTNFG 397
L +V+IGK YE I+T +
Sbjct: 174 LVDVEIGKFYEFIITTYS 191
>IMGA|Medtr8g040370.1 GH3 auxin-responsive promoter
chr08_pseudomolecule_IMGAG_V3 8648135-8648676 E
EGN_Mt090430 20090702
Length = 128
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 101/120 (84%)
Query: 11 VNKVIEDFEAITKDAERVQFETLKKILEENASAEYLKNLGLNGRTDPESFRDCVPLVTHK 70
++K I++FEA++ DAE+VQ TLK+ILE+NASA+YL+NLGLNG+TDPESF+ CVPLVTHK
Sbjct: 1 MDKFIQEFEALSTDAEKVQMNTLKRILEDNASAQYLQNLGLNGKTDPESFKACVPLVTHK 60
Query: 71 DLEPYIQRIADGDSSPVLTGKPIKTISLTSGTTQGRRKYVPFTEELMDNSLQIFRTSFAF 130
D EPYI RI DGD+SP+LT KPI +SL+SGTTQ + KY+P+ +E+ + ++QI + FA+
Sbjct: 61 DSEPYINRIIDGDASPILTTKPITAMSLSSGTTQRKPKYIPWNDEVFETTVQIHQAFFAY 120
>IMGA|Medtr5g016300.1 GH3 auxin-responsive promoter
chr05_pseudomolecule_IMGAG_V3 5683959-5684988 F
EGN_Mt090430 20090702
Length = 184
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 11 VNKVIEDFEAITKDAERVQFETLKKILEENASAEYLKNLGLNGRTDPESFRDCVPLVTHK 70
+N ++ E +TK+ + Q L +IL +NA EYL GLNG TD E+F+ V ++T++
Sbjct: 20 LNNALDFIEEMTKNTDSNQERVLAEILAQNAETEYLNRFGLNGATDRETFKSKVAVITYE 79
Query: 71 DLEPYIQRIADGDSSPVLTGKPIKTISLTSGTTQGRRKYVPFTEELMDNSLQIFRTSFAF 130
DL P IQRIA GD+SP+L PI +SGT+ G RK +P + MD L +
Sbjct: 80 DLIPDIQRIAKGDTSPILCAHPISEFLTSSGTSAGERKLMPTIHQEMDRRLLLCSLITPV 139
Query: 131 RNRAFP-VGNGKALQFNYGSKPTKTKGGLAA 160
N+ P + GKAL F + TKT GL A
Sbjct: 140 MNQYVPNLDKGKALHFLFIKAETKTPSGLVA 170
>IMGA|AC229702_11.1 GH3 auxin-responsive promoter AC229702.6
96003-95632 H EGN_Mt090430 20090702
Length = 123
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 13 KVIEDFEAITKDAERVQFETLKKILEENASAEYLKNLGLNGRTDPESFRDCVPLVTHKDL 72
K ++ E +T +A +Q L +IL +A EYL+ GLNGR D ++F+ VP+VT++DL
Sbjct: 31 KALKYIEDVTMNANEIQERVLAEILSSSALVEYLQRHGLNGRRDRKTFKKVVPVVTYEDL 90
Query: 73 EPYIQRIADGDSSPVLTGKPI 93
+ I RIA+GD+SP+L KPI
Sbjct: 91 KVDIDRIANGDASPILCSKPI 111