Jatropha Genome Database

JcCB0016411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016411.10 - phase: 0 /partial
         (315 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g129790.1 TGS; GTP1/OBG chr02_pseudomolecule_IMGAG_V3...   506   e-144

>IMGA|Medtr2g129790.1 TGS; GTP1/OBG chr02_pseudomolecule_IMGAG_V3
           31477168-31486032 E EGN_Mt090430 20090702
          Length = 394

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/282 (84%), Positives = 262/282 (92%)

Query: 34  KSNTRVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 93
           K  + VSAFLEIHDIAGLVRGAH+GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD+
Sbjct: 81  KPKSEVSAFLEIHDIAGLVRGAHQGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDT 140

Query: 94  VDPVRDLEVIGAELRLKDLEFIERRIEDIEKSMKRSNDKQLKIEHEMCQKVKAWLEDGKD 153
           VDPVRDLEVI  ELRLKD+EF++ ++ED+EKSMKRSNDKQLKIE E CQKVKA++E+GKD
Sbjct: 141 VDPVRDLEVITEELRLKDIEFMQNKLEDLEKSMKRSNDKQLKIELECCQKVKAFIEEGKD 200

Query: 154 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGETII 213
           VRLGDWKAA++EILN+FQLLTAKPVVYL+NM E+DYQRKKNKFLPKIH WVQEHGG  +I
Sbjct: 201 VRLGDWKAAEVEILNSFQLLTAKPVVYLINMTERDYQRKKNKFLPKIHTWVQEHGGGQMI 260

Query: 214 PFSAAFERNLADMTPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQI 273
           PFS   E+NL+DM PDEAAKYCE N VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQI
Sbjct: 261 PFSCVLEKNLSDMPPDEAAKYCEANNVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQI 320

Query: 274 RRQSKAPQAAGTIHSDFERGFICAEVMKFEDLKELGSESAVK 315
           RR +KAPQAAG IH+DFERGFICAEVMKF+DLKELGSESAVK
Sbjct: 321 RRLTKAPQAAGAIHTDFERGFICAEVMKFDDLKELGSESAVK 362