Jatropha Genome Database

JcCB0016381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016381.10 - phase: 0 
         (386 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g137650.1 hypothetical protein chr03_pseudomolecule_I...   265   3e-71
IMGA|Medtr8g121730.1 hypothetical protein chr08_pseudomolecule_I...   234   7e-62

>IMGA|Medtr3g137650.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 34960460-34961842 E
           EGN_Mt090430 20090702
          Length = 383

 Score =  265 bits (677), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/349 (42%), Positives = 230/349 (65%), Gaps = 21/349 (6%)

Query: 1   MDQTQVKDDRSLLYMLEALRKASKDLQNNSIFITHNPQTIM---------ESLLNLRNEA 51
           MD  Q    R +L +L +L++ASKDLQ     I  NP T +         E+LL L ++A
Sbjct: 1   MDHDQPSKHR-VLTLLNSLKQASKDLQ-----IKTNPFTFLFKTDSKAAVEALLELESKA 54

Query: 52  DALFSTNPNLSKLCNLLFTLKTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQ 111
             +FSTNPNL  L + L TLKTL + ++  +GY LKS+L RQI +YKI Q   ++E+E+Q
Sbjct: 55  ITIFSTNPNLYNLSHSLTTLKTLIENLEKCKGYGLKSILQRQIISYKISQASSSLESEIQ 114

Query: 112 ACIDKECVRNLVRIIQETESDSEEDKLRVLKGFEKRLSQGFDGDFQELVLRAKGFSLLES 171
             +D+  + NLV+ +QE   ++E+++++ +  FE+RL  GFD +FQ+L+LRAK F+LLE 
Sbjct: 115 TYLDRVIIINLVKTLQE--QNNEDEQVKAIVEFEQRLLSGFDLEFQDLILRAKIFTLLER 172

Query: 172 LICDSTRPMKIREQAALCVVGLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIR 231
            + +     ++RE++A+ +  LV+FN++VFVGLVLMGP +++L++ +S+ SI+V+  L+R
Sbjct: 173 TLIEPFSSKRVREESAMAIADLVKFNKNVFVGLVLMGPTIKALIAMSSECSIKVISLLVR 232

Query: 232 LIRTPLIDEIELEGEIPRIISLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIE 291
           LIR+PL+DEI   G IP+II    S D  ++VAA+DCV+E+ Y GR+EV+EAM++Q L++
Sbjct: 233 LIRSPLVDEILSNGMIPKIIGFLLSSDWCLRVAALDCVFELCYIGRREVVEAMLQQELVK 292

Query: 292 KLMELQRSTCGDDLAERDQFNGNVSNAEVCAEIVKKRPFASCVARFALQ 340
            LM LQR    +DL + ++         V  ++     F  CV+RFA+Q
Sbjct: 293 ILMILQRK---EDLCDVEEIREKEKVLGVDYDL-DDSVFDGCVSRFAIQ 337


>IMGA|Medtr8g121730.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 28310272-28311539 F
           EGN_Mt090430 20090702
          Length = 360

 Score =  234 bits (596), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 131/329 (39%), Positives = 206/329 (62%), Gaps = 35/329 (10%)

Query: 12  LLYMLEALRKASKDLQNNSIFITHNPQTIMESLLNLRNEADALFSTNPNLSKLCNLLFTL 71
           L+ +LEAL++AS+++QN+    + +  + +++L  L      +  TN N+S   + L  L
Sbjct: 21  LIQVLEALKQASQNIQNHHNHFSDSNSSSIKALFQLH----TILPTNSNIS---HHLTHL 73

Query: 72  KTLHQKIKTSQGYSLKSLLSRQITNYKIYQVGYAIEAEVQACIDKECVRNLVRIIQETES 131
           K+L   +++S+  SLKS ++R ++++ I +   AIE+E+Q+ ID+E V  L  ++    +
Sbjct: 74  KSLVNSLQSSKP-SLKSFITRPLSSHSITKTSAAIESELQSWIDRETVTTLSCLVSGNNN 132

Query: 132 DSEEDKLRVLKGFEKRLSQGFDGDFQELVLRAKGFSLLESLICDSTRPMKIREQAALCVV 191
           ++E++ L++L  F  R+SQGF+ + Q+LVL  K F  LESL+ D     +IRE A   + 
Sbjct: 133 ENEDELLQLLTRFSDRVSQGFNRELQQLVLNLKLFCSLESLLFDPKCSHRIREHAGFAIS 192

Query: 192 GLVRFNRDVFVGLVLMGPIVQSLVSTASDWSIQVLCSLIRLIRTPLIDEIELEGEIPRII 251
            L+RFN+DVFVG VLM P V++L+   S  SI+VLCSLIRLIR+P++DEIE  GEI +II
Sbjct: 193 ALIRFNKDVFVGEVLMNPTVEALIDIGSVRSIEVLCSLIRLIRSPIVDEIESNGEITKII 252

Query: 252 SLFSSQDLSIQVAAMDCVYEIAYFGRKEVIEAMIEQGLIEKLMELQRSTCGDDLAERDQF 311
           +L +S ++ + + AM+CV EI YFGRKE +E M+++G++EK +ELQR             
Sbjct: 253 ALLNSDNMKLSLLAMECVLEIGYFGRKEAVEGMLKEGVVEKFVELQR------------- 299

Query: 312 NGNVSNAEVCAEIVKKRPFASCVARFALQ 340
                          +  FASCVARFA+Q
Sbjct: 300 --------------LESEFASCVARFAVQ 314