Jatropha Genome Database

JcCB0016371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0016371.20 - phase: 0 
         (120 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g062520.1 ATFP4, related chr01_pseudomolecule_IMGAG_V...    92   8e-20
IMGA|Medtr3g106980.1 heavy-metal-associated domain-containing pr...    90   3e-19
IMGA|Medtr3g107030.1 heavy-metal-associated domain-containing pr...    87   2e-18
IMGA|Medtr3g106960.1 ATFP4, related chr03_pseudomolecule_IMGAG_V...    86   4e-18
IMGA|Medtr2g033170.1 Heavy metal transport/detoxification protei...    67   3e-12
IMGA|Medtr6g086570.1 Heavy metal transport/detoxification protei...    58   1e-09
IMGA|Medtr6g086610.1 Heavy metal transport/detoxification protei...    57   2e-09
IMGA|Medtr6g086520.1 von Willebrand factor, type C; Heavy metal ...    51   2e-07
IMGA|Medtr5g091980.1 ATFP4, related chr05_pseudomolecule_IMGAG_V...    49   9e-07
IMGA|Medtr6g086510.1 TNFR/CD27/30/40/95 cysteine-rich region chr...    47   3e-06

>IMGA|Medtr1g062520.1 ATFP4, related chr01_pseudomolecule_IMGAG_V3
           12287672-12286336 E EGN_Mt090430 20090702
          Length = 117

 Score = 91.7 bits (226), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 66/119 (55%), Gaps = 15/119 (12%)

Query: 2   QQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRN 61
           +QKIVI+V MN  K R+KA+ I VGVSGVE A +  D+K+QIEV GE +D+VKL SLLR 
Sbjct: 3   KQKIVIRVPMNNQKLRNKAMAIAVGVSGVEGATIKGDNKDQIEVTGEEIDSVKLASLLRK 62

Query: 62  KLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXXVQPVNWSCSYGYGVPQYIIY 120
           K G              YA+LVS+  VG              V W C Y   VP Y +Y
Sbjct: 63  KFG--------------YADLVSIEAVGKTEEKKDKEKAEAIVAWPCVYS-SVPHYPVY 106


>IMGA|Medtr3g106980.1 heavy-metal-associated domain-containing
           protein, related chr03_pseudomolecule_IMGAG_V3
           27067531-27068929 F EGN_Mt090430 20090702
          Length = 115

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 22/119 (18%)

Query: 2   QQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRN 61
           +QKIVIKVSMN  K RSKA+ I  GVSGVE  A+  ++K+QIEV GE +D+V+LTSLLR 
Sbjct: 3   KQKIVIKVSMNNQKLRSKAMTIAAGVSGVEGTAIQGENKDQIEVTGEQIDSVRLTSLLR- 61

Query: 62  KLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXXVQPVNWSCSYGYGVPQYIIY 120
              KK C          +AELVSV PVG            + V    ++ YG P Y +Y
Sbjct: 62  ---KKFC----------HAELVSVGPVGKTEE--------KKVEAIVAWNYGAPNYPVY 99


>IMGA|Medtr3g107030.1 heavy-metal-associated domain-containing
           protein, related chr03_pseudomolecule_IMGAG_V3
           27079537-27080462 H EGN_Mt090430 20090702
          Length = 115

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 66/117 (56%), Gaps = 21/117 (17%)

Query: 2   QQKIVIKVS-MNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
           +QKIVIKVS MN HKSRSKA+KI VGVSGVESAA+  D K+QIEV GE +DA KLT LLR
Sbjct: 3   KQKIVIKVSIMNSHKSRSKAMKIAVGVSGVESAAVKGDSKDQIEVTGEQIDAAKLTCLLR 62

Query: 61  NKLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXXVQPVNWSCSYGYGVPQY 117
            K                +A+LVSV  V               V W C  GY  P Y
Sbjct: 63  KKF--------------CHADLVSVGEVEKKEEKKEEAI----VAWPCVAGY--PHY 99


>IMGA|Medtr3g106960.1 ATFP4, related chr03_pseudomolecule_IMGAG_V3
           27065238-27063602 E EGN_Mt090430 20090702
          Length = 117

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 64/119 (53%), Gaps = 15/119 (12%)

Query: 2   QQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRN 61
           +QKIVI+V MN  K R+KA+ I VGVSGVE   +  D+K+QIEV GE +D+VKL SLLR 
Sbjct: 3   KQKIVIRVPMNNQKLRNKAMAIAVGVSGVEGTTIKGDNKDQIEVTGEEIDSVKLASLLRK 62

Query: 62  KLGKKDCLTCFLSNNKTYAELVSVSPVGXXXXXXXXXXXVQPVNWSCSYGYGVPQYIIY 120
           K G              YA+LVS+  VG              V W   Y   VP Y +Y
Sbjct: 63  KFG--------------YADLVSIEAVGKTEEKKDKEKAEAIVAWPYVYS-SVPHYPVY 106


>IMGA|Medtr2g033170.1 Heavy metal transport/detoxification protein
          chr02_pseudomolecule_IMGAG_V3 8990501-8989863 E
          EGN_Mt090430 20090702
          Length = 77

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QKIV++V M   K R+KAL++V G +GV    L  D+K++I VIG+GVDAV LT  LR
Sbjct: 1  MKQKIVMRVHMRCQKCRTKALEVVAGANGVNFVGLEGDEKDKIVVIGDGVDAVTLTKCLR 60

Query: 61 NKLGKKD 67
           K+G+ +
Sbjct: 61 KKVGQTE 67


>IMGA|Medtr6g086570.1 Heavy metal transport/detoxification protein
          chr06_pseudomolecule_IMGAG_V3 17728129-17725180 F
          EGN_Mt090430 20090702
          Length = 233

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QK+VIK+ M+  K R+KALK    V GV S +L  +DK+ I VIG+ VD + L + L+
Sbjct: 1  MKQKMVIKLQMDCDKCRNKALKTAAEVQGVTSVSLEGNDKDSICVIGDDVDTICLANQLK 60

Query: 61 NKLG 64
           K  
Sbjct: 61 KKFN 64


>IMGA|Medtr6g086610.1 Heavy metal transport/detoxification protein
          chr06_pseudomolecule_IMGAG_V3 17746521-17743595 E
          EGN_Mt090430 20090702
          Length = 233

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)

Query: 1  MQQKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLR 60
          M+QK+VIK+ M+  K R+KALK    V GV S +L  +DK+ I VIG+ VD + L + L+
Sbjct: 1  MKQKMVIKLQMDCDKCRNKALKTAAEVQGVTSVSLEGNDKDSICVIGDDVDTICLANQLK 60

Query: 61 NKLG 64
           K  
Sbjct: 61 KKFN 64


>IMGA|Medtr6g086520.1 von Willebrand factor, type C; Heavy metal
          transport/detoxification protein
          chr06_pseudomolecule_IMGAG_V3 17701393-17698685 E
          EGN_Mt090430 20090702
          Length = 213

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 11 MNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNKL 63
          M+  K R+KALK    V GV S +L  DDK++I V G+ VD V L ++L+ K 
Sbjct: 1  MDCEKCRNKALKTAAEVKGVTSVSLEGDDKDKISVTGDNVDTVCLANMLKKKF 53


>IMGA|Medtr5g091980.1 ATFP4, related chr05_pseudomolecule_IMGAG_V3
          36051404-36052093 H EGN_Mt090430 20090702
          Length = 134

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 3  QKIVIKVSMNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGE-GVDAVKLTSLLRN 61
          +KIVI++ M   K RSKALKI     GV S +L  + ++Q+ VIG+  +D V LT  LR 
Sbjct: 2  KKIVIQMHMESDKFRSKALKIAAAFQGVISVSLEGESRDQVVVIGDYQIDCVCLTKKLRK 61

Query: 62 KL 63
          K 
Sbjct: 62 KF 63


>IMGA|Medtr6g086510.1 TNFR/CD27/30/40/95 cysteine-rich region
          chr06_pseudomolecule_IMGAG_V3 17694745-17695865 H
          EGN_Mt090430 20090702
          Length = 177

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 11 MNGHKSRSKALKIVVGVSGVESAALGKDDKNQIEVIGEGVDAVKLTSLLRNKL 63
          M+  K R+KALK    V GV S +L  DDK+++ V G+ VD V L + L+ K 
Sbjct: 1  MDNEKCRTKALKTAAEVKGVTSVSLEGDDKDRVCVTGDNVDIVCLANQLKKKF 53