Jatropha Genome Database

JcCB0014891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014891.10 - phase: 0 /partial
         (273 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g016540.1 DNA-binding WRKY chr05_pseudomolecule_IMGAG...    96   3e-20
IMGA|Medtr8g130290.1 DNA-binding WRKY chr08_pseudomolecule_IMGAG...    54   9e-08
IMGA|Medtr8g130070.1 DNA-binding WRKY chr08_pseudomolecule_IMGAG...    54   9e-08

>IMGA|Medtr5g016540.1 DNA-binding WRKY chr05_pseudomolecule_IMGAG_V3
           5840721-5842661 E EGN_Mt090430 20090702
          Length = 271

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 65/102 (63%), Gaps = 14/102 (13%)

Query: 1   MAVELMMSYRNENFISKMEESVVQEAASGLESVNKLIRLLSQKNQEKDQXXXXXXXXXXX 60
           MAVELM+ ++N N  +K +E+ VQEAASGL+S+ KLI+LLS                   
Sbjct: 1   MAVELMIGHKNNNLTNKFQENAVQEAASGLQSIEKLIKLLSSSQTCSSN----------- 49

Query: 61  XMDNMDMDCKAVADVAVSKFKKVISLL--GRTRTGHARFRRA 100
             +   MD K VADVAVSKFK VISLL   RTRTGHARFRRA
Sbjct: 50  -SNPNSMDYKTVADVAVSKFKNVISLLNQNRTRTGHARFRRA 90


>IMGA|Medtr8g130290.1 DNA-binding WRKY chr08_pseudomolecule_IMGAG_V3
           31037869-31039397 F EGN_Mt090430 20090702
          Length = 317

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 19  EESVVQEAAS-GLESVNKLIRLLSQKNQEKDQXXXXXXXXXXXXMDNMDMDCKAVADVAV 77
           E+  +QEAAS GL+S+ +LIR+LS +                       +DC  + D  V
Sbjct: 15  EQRAIQEAASAGLKSMEQLIRVLSSQTSSSSSSSNQLNQLDLVN----KLDCTEITDFTV 70

Query: 78  SKFKKVISLLGRTRTGHARFRRA 100
           SKFK VI+LL   RTGHARFRRA
Sbjct: 71  SKFKTVINLL--NRTGHARFRRA 91


>IMGA|Medtr8g130070.1 DNA-binding WRKY chr08_pseudomolecule_IMGAG_V3
           30932749-30934277 F EGN_Mt090430 20090702
          Length = 317

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 19  EESVVQEAAS-GLESVNKLIRLLSQKNQEKDQXXXXXXXXXXXXMDNMDMDCKAVADVAV 77
           E+  +QEAAS GL+S+ +LIR+LS +                       +DC  + D  V
Sbjct: 15  EQRAIQEAASAGLKSMEQLIRVLSSQTSSSSSSSNQLNQLDLVN----KLDCTEITDFTV 70

Query: 78  SKFKKVISLLGRTRTGHARFRRA 100
           SKFK VI+LL   RTGHARFRRA
Sbjct: 71  SKFKTVINLL--NRTGHARFRRA 91