Jatropha Genome Database

JcCB0014511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0014511.20 - phase: 0 /pseudo/partial
         (186 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233659_3.1 AAA ATPase AC233659.1 11110-14927 E EGN_Mt0904...   158   1e-39

>IMGA|AC233659_3.1 AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430
           20090702
          Length = 331

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 89/110 (80%)

Query: 76  QGKKLLVIGTTSEVGFLDSIGICDSFSVTYHVPRLKADDAKKVLKQLNVFXXXXXXXXXX 135
           +GKKL+VIGTTSEV FL+S+G  D+FSVTY+VP L  +DAKKVL+QLNVF          
Sbjct: 219 KGKKLMVIGTTSEVDFLESLGFVDTFSVTYNVPTLNKEDAKKVLEQLNVFAEEDIVSAAD 278

Query: 136 XLNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGRQKIKIAHFYDCLQDVVR 185
            L++ PIKKLYMLIEMAAQG HGGSAEAIYSG++KI I+HFYDCL DVVR
Sbjct: 279 ALDNTPIKKLYMLIEMAAQGAHGGSAEAIYSGQEKINISHFYDCLGDVVR 328