Jatropha Genome Database

JcCB0013651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013651.10 - phase: 0 
         (303 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g093190.1 UBX; UBA-like; SEP chr05_pseudomolecule_IMG...   333   8e-92

>IMGA|Medtr5g093190.1 UBX; UBA-like; SEP
           chr05_pseudomolecule_IMGAG_V3 36636905-36632775 E
           EGN_Mt090430 20090702
          Length = 422

 Score =  333 bits (853), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 174/297 (58%), Positives = 207/297 (69%), Gaps = 12/297 (4%)

Query: 12  SSSRTGGIRTLSDLNRRSGPXXXXXXXAPQEYYTGGEKSGMLVQDPTKG-NDVDAIFNQA 70
           S SR  GIRTL D+ R            PQEYY GG+KSGMLVQDPT+G N VD IF+QA
Sbjct: 131 SGSRQSGIRTLRDVKRDQD--SDSESDEPQEYYAGGQKSGMLVQDPTRGGNSVDDIFDQA 188

Query: 71  RQLGAVEGPLDQXXXXXXXXXXXXXXRLLSGETVPSAPQQPEAVIHNIVFWTNGFTVNDG 130
           +Q+ AVE P +               RLLSGE VPSAPQ  E+V H + FW NGF+VNDG
Sbjct: 189 KQV-AVEPPAENSSRSRSFTGTA---RLLSGEAVPSAPQPVESVTHVVTFWRNGFSVNDG 244

Query: 131 PLRRLDDPENASFLESIRKSECPKELEPEDRRSSVHVNLIRRDEQCPEPEKQRHVPFQGV 190
           PLRRL+DP+NA FLESI+KSECPKELEP DRR+SV ++L RRDE  PEP K R+  F+GV
Sbjct: 245 PLRRLEDPQNAEFLESIKKSECPKELEPTDRRTSVRLSLTRRDENYPEPVKPRNTAFRGV 304

Query: 191 GRTLGSSXXXXXXXXXXXXXLN-----TAPTPSMGLVVNETLPSTSIQLRLADGTRMIAH 245
           GRTLG S                    TAP P+MGLVV+++ P TSIQLRL+DGTRM++ 
Sbjct: 305 GRTLGDSSSNGEAASGPSQTTADASPLTAPAPAMGLVVDDSKPVTSIQLRLSDGTRMVSR 364

Query: 246 FNFNHTVNDIRAFINASRPGGAQNYQLQLMGFPPKLLSDPTQTIEEAGLGNSVVIQK 302
           FN +H + DIRAFI+ASRPGG ++YQLQ MGFPPK L+D  QTIE+AG+ NSVVIQK
Sbjct: 365 FNHHHAIRDIRAFIDASRPGGTRSYQLQTMGFPPKQLTDLDQTIEQAGIANSVVIQK 421