Jatropha Genome Database

JcCB0013521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013521.10 - phase: 0 
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g043130.1 UPF0527 membrane protein B, related chr02_p...   217   3e-57

>IMGA|Medtr2g043130.1 UPF0527 membrane protein B, related
           chr02_pseudomolecule_IMGAG_V3 12287266-12286534 E
           EGN_Mt090430 20090702
          Length = 175

 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 132/163 (80%), Gaps = 1/163 (0%)

Query: 3   SQTLTDPTSS-SMDPIFHIVKIVPYXXXXXXXXXXXXXXXXXXXXMTVFALVLLTYFMVV 61
           + T+TDP+S+ S+DPIFH+++I+P+                      VFALVLLTYFMVV
Sbjct: 12  TTTVTDPSSAASIDPIFHLLRILPFSFLRPPRLRLKLPSFSLPSSNLVFALVLLTYFMVV 71

Query: 62  SGIVYDVIVEPPGIGSTQDPATGSIRPVVFLPGRVNGQYIIEGLSSGFMFVLGGTGIVLM 121
           SGIVYD+IVEPPGIGS QDP TG+++PVVF+ GRVNGQYIIEGLSSGFMFVLGG GI+++
Sbjct: 72  SGIVYDIIVEPPGIGSMQDPYTGAVKPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIIML 131

Query: 122 DLALDKNRAKSVKVSYATAGISSLIIAYVMSMLFIRIKIPGYL 164
           DLALD+NR +SVK SYATAGI+S++IAYVMSMLF+RIKIP YL
Sbjct: 132 DLALDRNRDRSVKASYATAGITSVVIAYVMSMLFVRIKIPAYL 174