Jatropha Genome Database

JcCB0013291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013291.10 + phase: 0 
         (111 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g038060.1 Unknown, related chr02_pseudomolecule_IMGAG...   171   7e-44

>IMGA|Medtr2g038060.1 Unknown, related chr02_pseudomolecule_IMGAG_V3
           10603041-10606326 E EGN_Mt090430 20090702
          Length = 110

 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 94/110 (85%), Gaps = 1/110 (0%)

Query: 1   MEGADEGGIERVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQXXXXXXXXXXXXDWNAM 60
           MEG DEG +E VVDSKD+QQQSKA DKLTDRVEDRQLDSTRVQ            DWNAM
Sbjct: 1   MEGGDEG-VEMVVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAM 59

Query: 61  RMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIQHLL 110
           R+REKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAI+HLL
Sbjct: 60  RLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLL 109