Jatropha Genome Database

JcCB0013151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.20 - phase: 0 
         (221 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g028540.1 Zinc finger, LRP1-type chr01_pseudomolecule...   151   3e-37
IMGA|Medtr5g021040.1 Zinc finger, LRP1-type chr05_pseudomolecule...   145   1e-35
IMGA|Medtr4g096560.1 Zinc finger, LRP1-type chr04_pseudomolecule...   143   6e-35
IMGA|Medtr5g096790.1 Zinc finger, LRP1-type chr05_pseudomolecule...   119   1e-27
IMGA|Medtr3g006190.1 Zinc finger, LRP1-type chr03_pseudomolecule...   112   1e-25
IMGA|Medtr8g042820.1 Zinc finger, LRP1-type chr08_pseudomolecule...   107   4e-24
IMGA|Medtr8g042680.1 Zinc finger, LRP1-type chr08_pseudomolecule...    82   2e-16
IMGA|Medtr2g014590.1 Zinc finger, LRP1-type chr02_pseudomolecule...    70   1e-12

>IMGA|Medtr1g028540.1 Zinc finger, LRP1-type
           chr01_pseudomolecule_IMGAG_V3 6967160-6968876 E
           EGN_Mt090430 20090702
          Length = 338

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 119/226 (52%), Gaps = 28/226 (12%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQ------ 66
           CQDCGNQAKK+C H+RCRTCCKS+GF+CQTHVKSTW+PA +RR R   +   QQ      
Sbjct: 122 CQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQQQ 181

Query: 67  ---NPHQQPRTNSNPK-----RLRLSPL----TGLEVGNFPAEVNSIATFRCFRMSSIDE 114
              +  ++ R N N        L  +P+    TGLE+GNFP E+NS A FRC ++S++D 
Sbjct: 182 QQFHSSRRHRENQNDPSGASGSLTCTPVPITTTGLELGNFPPELNSPAVFRCVKVSAMDA 241

Query: 115 EGDYQLAYQTSVGIGGHVFQGILYDQGPHQESFSTQLLQDTXXXXXXXXXXXXXXXXXXX 174
           + D + AYQT+V IGG VF+GILYDQG         L                       
Sbjct: 242 Q-DERYAYQTAVNIGGRVFKGILYDQG---------LEGSYTSPNAAVAGGEGSTGGGGG 291

Query: 175 XXXXXXXXXXXXXXXXXXXVGAEHSSSYPFPLNAFTSGTQLFLHPK 220
                                 E+SS YP PLNAF +GTQ F  P+
Sbjct: 292 SGGEGNQQNLITTTTTNVNNPFEYSSLYPAPLNAFMAGTQFFPPPR 337


>IMGA|Medtr5g021040.1 Zinc finger, LRP1-type
           chr05_pseudomolecule_IMGAG_V3 7963057-7965047 E
           EGN_Mt090430 20090702
          Length = 323

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 116/238 (48%), Gaps = 37/238 (15%)

Query: 9   GGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIA------ 62
           G   CQDCGNQAKK+C HMRCRTCCKS+GF+CQTHVKSTW+PA RRR R           
Sbjct: 96  GSISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQLSA 155

Query: 63  ---------VQQQNPHQQPRTNSNP---------KRLRLSPLTGLEVGNFPAEVNSIATF 104
                    +  QN H+    N++          + L L     L+  NFPA VNS A F
Sbjct: 156 PKSFQQHGDIVPQNRHRDLNNNNSSLACTRLPTNRSLTLPSAGLLDEMNFPAVVNSPAEF 215

Query: 105 RCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQGPHQESFSTQLLQDTXXXXXXXXX 164
           RC R+SS+DE  + + AY T+V IGGHVF+GILYD GP   S S  +             
Sbjct: 216 RCVRVSSVDEN-EEEYAYSTAVNIGGHVFRGILYDYGPDHGSNSYNMAAGNASNSSGTAL 274

Query: 165 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAEHSSSYPFPLNAF--TSGTQLFLHPK 220
                                           + SS YP PLN F  +SGTQ F HP+
Sbjct: 275 EGVVEPLNLISGVPASGVGEI----------VDPSSLYPAPLNTFMPSSGTQFFPHPR 322


>IMGA|Medtr4g096560.1 Zinc finger, LRP1-type
           chr04_pseudomolecule_IMGAG_V3 20357445-20355811 E
           EGN_Mt090430 20090702
          Length = 267

 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 96/142 (67%), Gaps = 8/142 (5%)

Query: 7   LLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAVQQQ 66
           +L G +CQDCGNQAKK+C + RCR+CCK+KGF C TH++STWIPA RRR R         
Sbjct: 14  VLKGPKCQDCGNQAKKDCAYSRCRSCCKNKGFNCHTHIRSTWIPADRRRHR-------MD 66

Query: 67  NPHQQPRTNSNPKRLRLSPLTGLEVGNFPAEVNSIATFRCFRMSSIDEEGDYQLAYQTSV 126
           +P  Q   + + +  +++ ++  +   FPA  +S+ T  C ++ S+DE  + + AYQTSV
Sbjct: 67  HPSDQHHLHEHKRHKQINTISSSDEFKFPAVTSSMTTLTCVQVRSMDETVN-ETAYQTSV 125

Query: 127 GIGGHVFQGILYDQGPHQESFS 148
            IGGHVF GILYDQGP ++SF+
Sbjct: 126 EIGGHVFSGILYDQGPDEQSFN 147


>IMGA|Medtr5g096790.1 Zinc finger, LRP1-type
           chr05_pseudomolecule_IMGAG_V3 38515866-38513842 F
           EGN_Mt090430 20090702
          Length = 342

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 26/154 (16%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIAV--------- 63
           CQDCGNQAKK+C + RCRTCCKS+GF+C THVKSTW+PA RRR R S+ A          
Sbjct: 124 CQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLSSTATTTVVAGGGS 183

Query: 64  -QQQNPHQQPR------------TNSNPKRLRLSPLTGLEVG---NFPAEVNSIATFRCF 107
               +  ++PR            +N+ P R   +  +  + G   + P +V + A F+C 
Sbjct: 184 SGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKDSMPGQVRAPAVFKCV 243

Query: 108 RMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
           R++S+D+  D + AYQ  V IGGHVF+G LYD G
Sbjct: 244 RVTSVDDGKD-EYAYQAVVKIGGHVFKGFLYDHG 276


>IMGA|Medtr3g006190.1 Zinc finger, LRP1-type
           chr03_pseudomolecule_IMGAG_V3 676562-671142 F
           EGN_Mt090430 20090702
          Length = 329

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 83/155 (53%), Gaps = 28/155 (18%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNI----------- 61
           CQDCGN+AKK+CV  RCRTCCK +G++C TH+KSTWIP+ RRR R   +           
Sbjct: 134 CQDCGNRAKKDCVFRRCRTCCKGRGYDCSTHLKSTWIPSTRRREREVEMFAGGGDGEGCS 193

Query: 62  AVQQQ------------NPHQQPRTNSNPKRLRLSPL---TGLEVGNFPAEVNSIATFRC 106
            V++Q              H      + PK    S      G + G  P  VN+ A FRC
Sbjct: 194 GVKRQKGLLGSSQNAAATSHSSNSNGTTPKSFATSSCHQDAGFKEG-LPGHVNAPAVFRC 252

Query: 107 FRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
            R+++I   G+ + AY  +V I GHVF+G LYD G
Sbjct: 253 HRVTAIG-NGEDEFAYLATVHISGHVFKGFLYDHG 286


>IMGA|Medtr8g042820.1 Zinc finger, LRP1-type
           chr08_pseudomolecule_IMGAG_V3 9053911-9052343 H
           EGN_Mt090430 20090702
          Length = 327

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 34/161 (21%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIA---------- 62
           CQDCGN+AKK+C + RCRTCCK +GF+C THVKSTWIPA  RR R   +A          
Sbjct: 124 CQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVVAEGGDSDGGAS 183

Query: 63  -----------VQQQNPHQQPRTNSNPKRLRLSPLTGLEVGN-----------FPAEVNS 100
                        Q N      ++S+    R   L+ L++ +            P  V +
Sbjct: 184 SGTKRQKILMTSSQNNVAANSHSSSSNAATRTRSLS-LDITSSCHQDPGFKQTLPRYVRA 242

Query: 101 IATFRCFRMSSIDEEGDYQLAYQTSVGIGGHVFQGILYDQG 141
            A F+C R+S+I   G+ +LAY  +V I GHVF+G LYDQG
Sbjct: 243 PAVFKCHRVSAIG-NGEDELAYLATVNISGHVFKGFLYDQG 282


>IMGA|Medtr8g042680.1 Zinc finger, LRP1-type
           chr08_pseudomolecule_IMGAG_V3 8941070-8940417 H
           EGN_Mt090430 20090702
          Length = 218

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 40/50 (80%)

Query: 13  CQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKSTWIPAYRRRLRPSNIA 62
           CQDCGN+AKK+C + RCRTCCK +GF+C THVKSTWIPA  RR R   +A
Sbjct: 124 CQDCGNRAKKDCSYKRCRTCCKGRGFDCSTHVKSTWIPASMRRDRSMVVA 173


>IMGA|Medtr2g014590.1 Zinc finger, LRP1-type
          chr02_pseudomolecule_IMGAG_V3 3805470-3806014 F
          EGN_Mt090430 20090702
          Length = 72

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 37/44 (84%)

Query: 4  QGGLLGGSRCQDCGNQAKKECVHMRCRTCCKSKGFECQTHVKST 47
          +G +L G +CQDCGNQAKK+C + RCR+CCK+K F CQTH++++
Sbjct: 19 RGEVLKGLKCQDCGNQAKKDCAYSRCRSCCKNKDFNCQTHIRTS 62