Jatropha Genome Database

JcCB0013151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0013151.10 - phase: 1 /partial
         (288 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   305   1e-83
IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    52   4e-07
IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    52   4e-07

>IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E
           EGN_Mt090430 20090702
          Length = 840

 Score =  305 bits (782), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 142/206 (68%), Positives = 171/206 (83%), Gaps = 6/206 (2%)

Query: 89  MDEATPTFVWGTNISVEDVKERFQMFLKHYRDNSQSLSNEIFE------EGKYVKAIRKV 142
           MD+A PT+VWGTNISVEDV +  Q FLKH+R+ S S   +         EGKY K I++V
Sbjct: 103 MDDAGPTYVWGTNISVEDVNDAIQRFLKHFREKSASQGGDDDLDMDLDIEGKYEKLIKQV 162

Query: 143 LEVEGEGLDVDAHDVFDYDSDLYAKMVRYPLEVLAIFDIVLMDFVGLMDPLFEKHVQVRI 202
           +E+EGE +DVDA DVFD+D +LY+KMVRYPLEVLAIFD+VLM+ V  M+P+FEKHVQ RI
Sbjct: 163 IELEGESIDVDARDVFDHDHELYSKMVRYPLEVLAIFDMVLMNMVTRMNPMFEKHVQTRI 222

Query: 203 YNLKTSTTMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAIFRCLVCGNVAGPFLVERGR 262
           +NLK+ST+MRNLNPSDIE+MVS+KGMIIRCSSIIPEIREAIFRCLVCG  + P  VERGR
Sbjct: 223 FNLKSSTSMRNLNPSDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGR 282

Query: 263 INEPTVCLKQECLAKNSMTLVHNRCR 288
           I EPTVCL++EC ++NSMTLVHNRC+
Sbjct: 283 IAEPTVCLREECQSRNSMTLVHNRCK 308


>IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32897406-32892230 E
           EGN_Mt090430 20090702
          Length = 929

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 9/173 (5%)

Query: 116 KHYRDNSQSLSNEIFEEG--KYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPL 173
           + ++D   S  N   E G  +YV+ I +++      L++D         ++   +   P 
Sbjct: 218 RKFKDFLLSYVNPKNEHGDFEYVRLISEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPH 277

Query: 174 EVLAIFDIVLMDFVGLMDPLFEKHVQ----VRIYNLKTSTTMRNLNPSDIEKMVSLKGMI 229
            VL + + V    V  +   + KH+     VRI NL     +RN+    +  M+ + G++
Sbjct: 278 SVLEVMEDVAKSVVFNLHANY-KHIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVV 336

Query: 230 IRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQECLAKNSMTL 282
            R S + P++++  + C  CG V GPF   +   +E  V    EC +K   T+
Sbjct: 337 TRRSGVFPQLQQVKYDCGKCGAVLGPFF--QNSYSEVKVGSCPECQSKGPFTV 387


>IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32903343-32908349 E
           EGN_Mt090430 20090702
          Length = 883

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 9/173 (5%)

Query: 116 KHYRDNSQSLSNEIFEEG--KYVKAIRKVLEVEGEGLDVDAHDVFDYDSDLYAKMVRYPL 173
           + ++D   S  N   E G  +YV+ I +++      L++D         ++   +   P 
Sbjct: 172 RKFKDFLLSYVNPKNEHGDFEYVRLISEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPH 231

Query: 174 EVLAIFDIVLMDFVGLMDPLFEKHVQ----VRIYNLKTSTTMRNLNPSDIEKMVSLKGMI 229
            VL + + V    V  +   + KH+     VRI NL     +RN+    +  M+ + G++
Sbjct: 232 SVLEVMEDVAKSVVFNLHANY-KHIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVV 290

Query: 230 IRCSSIIPEIREAIFRCLVCGNVAGPFLVERGRINEPTVCLKQECLAKNSMTL 282
            R S + P++++  + C  CG V GPF   +   +E  V    EC +K   T+
Sbjct: 291 TRRSGVFPQLQQVKYDCGKCGAVLGPFF--QNSYSEVKVGSCPECQSKGPFTV 341