Jatropha Genome Database

JcCB0012961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012961.10 - phase: 2 /pseudo/partial
         (359 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g016920.1 Aspartyl-tRNA synthetase bacterial/mitochon...   183   1e-46
IMGA|Medtr5g028440.1 Aminoacyl-transfer RNA synthetase, class II...   174   6e-44

>IMGA|Medtr1g016920.1 Aspartyl-tRNA synthetase
           bacterial/mitochondrial type; Nucleic acid-binding,
           OB-fold, subgroup chr01_pseudomolecule_IMGAG_V3
           3443141-3437816 E EGN_Mt090430 20090702
          Length = 541

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 96/112 (85%)

Query: 197 ASEGGASAFKLDYKGQPACLAQSHQLHKQMAICGDKERVFEVGSVFKAEESYTPRHLCEF 256
           +SEGGA+ F+LDYKGQPACLAQS QLHKQM+ICGD  RVFE+G VF+AE+S+T RHLCEF
Sbjct: 267 SSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHRHLCEF 326

Query: 257 VGHDVEMEIKKHYSEVMDVVDRLFITIFDYLNEHCKNELEAVQRQHPFEPLK 308
            G DVEMEIKKHY EVMDVVD+LF+ +FD LN  CK +LEAV  Q+PFEPLK
Sbjct: 327 TGLDVEMEIKKHYFEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLK 378


>IMGA|Medtr5g028440.1 Aminoacyl-transfer RNA synthetase, class II
           chr05_pseudomolecule_IMGAG_V3 11735217-11738772 E
           EGN_Mt090430 20090702
          Length = 590

 Score =  174 bits (441), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 95/114 (83%)

Query: 197 ASEGGASAFKLDYKGQPACLAQSHQLHKQMAICGDKERVFEVGSVFKAEESYTPRHLCEF 256
           +SEGGAS FKL+YKG PACLAQS QLHKQ+AICGD  RVFEVG+V++AE+S+T RHLCEF
Sbjct: 316 SSEGGASVFKLNYKGHPACLAQSPQLHKQIAICGDFNRVFEVGAVYRAEDSFTHRHLCEF 375

Query: 257 VGHDVEMEIKKHYSEVMDVVDRLFITIFDYLNEHCKNELEAVQRQHPFEPLKVI 310
            G D EM I  HY E+MD+VDRLF+ IFD LN+ CK +LEAV+ Q+PFEPLK +
Sbjct: 376 TGLDAEMRIDCHYFEIMDIVDRLFVAIFDCLNQKCKKDLEAVRNQYPFEPLKYL 429