Jatropha Genome Database

JcCB0012061.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0012061.30 - phase: 2 /partial
         (134 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g031360.1 ATP-binding region, ATPase-like chr01_pseud...    81   1e-16
IMGA|Medtr8g073570.1 Pentatricopeptide repeat chr08_pseudomolecu...    50   4e-07

>IMGA|Medtr1g031360.1 ATP-binding region, ATPase-like
           chr01_pseudomolecule_IMGAG_V3 7592788-7587438 F
           EGN_Mt090430 20090702
          Length = 818

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 49/66 (74%)

Query: 2   VDNDPDEATDNDMKGIEDAYVDKKKGEYAKFWNELGESIKLNIMEDATNRNILAKFLKFE 61
            + DPDE+TD + K    + VD+KKG+Y KFWNE G+SIKL I+EDATNRN L+K L+FE
Sbjct: 487 AEEDPDESTDREKKEETSSDVDEKKGQYTKFWNEFGKSIKLGIIEDATNRNRLSKLLRFE 546

Query: 62  RIKSDA 67
             KS+ 
Sbjct: 547 TTKSEG 552


>IMGA|Medtr8g073570.1 Pentatricopeptide repeat
           chr08_pseudomolecule_IMGAG_V3 14383159-14386718 H
           EGN_Mt090430 20090702
          Length = 647

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query: 66  DAMAVLKKMLNSGWSPDSIFFLSILAACSHAKFLDVLRLAF 106
           +A+A+  +MLNSG +PDSI F++IL+ACSH+  LD  R+ F
Sbjct: 330 NAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYF 370