Jatropha Genome Database
- JcCB0012061.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0012061.20 - phase: 2 /TE
(1291 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 555 e-158
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 414 e-115
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 413 e-115
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 412 e-115
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 296 4e-80
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 288 2e-77
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 268 2e-71
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 248 1e-65
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 235 1e-61
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 206 6e-53
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 202 7e-52
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 194 2e-49
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 194 2e-49
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 194 2e-49
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 187 3e-47
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 182 1e-45
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 180 4e-45
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 164 2e-40
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 162 8e-40
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 153 5e-37
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 151 2e-36
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 150 3e-36
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 128 2e-29
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 115 1e-25
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 112 2e-24
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 107 4e-23
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 100 3e-21
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 97 6e-20
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 93 1e-18
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 86 8e-17
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 84 4e-16
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 78 3e-14
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 78 4e-14
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 75 1e-13
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 75 2e-13
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 75 2e-13
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 74 6e-13
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 73 8e-13
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 73 1e-12
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 72 2e-12
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 71 3e-12
IMGA|Medtr3g097190.1 copia-type polyprotein, putative chr03_pseu... 71 3e-12
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 68 3e-11
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 64 6e-10
IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H... 63 8e-10
IMGA|Medtr3g169320.1 Polynucleotidyl transferase, Ribonuclease H... 63 8e-10
IMGA|Medtr8g081950.1 lectin receptor kinase, related chr08_pseud... 59 1e-08
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 55 3e-07
IMGA|Medtr5g028800.1 Reverse transcriptase, RNA-dependent DNA po... 52 2e-06
IMGA|AC235488_16.1 Polynucleotidyl transferase, Ribonuclease H f... 52 2e-06
IMGA|Medtr7g046200.1 Polynucleotidyl transferase, Ribonuclease H... 52 2e-06
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 50 8e-06
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 322/889 (36%), Positives = 483/889 (54%), Gaps = 82/889 (9%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLV 494
RLGH + + + +MS Y + + VC+IC KQ LPF ++ + A+ +L+
Sbjct: 498 RLGHLSNQRMIKMSH----LYPSIVHNNRDVCDICHFSKQKHLPFSSSLS-HASTNFELL 552
Query: 495 HTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKI 554
H D+ GP++ S+ G+ YFL +DD +R W+ +K KSEV K F ++ Q ++
Sbjct: 553 HFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFHVTP 612
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +RSDNG E+ F S GI HQ + TPQQN ERK++ ++ + R LL + +
Sbjct: 613 KYVRSDNGPEFLLNDFYS---SHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSK 669
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P F + A+ +V+L+NR+PT L +++PY + P I ++F +
Sbjct: 670 LPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPDI---QLF------------K 714
Query: 675 SKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE------------AAGWCW 722
SKL RA+K +F+GY S K Y +F L +I +SR V F E W +
Sbjct: 715 SKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENILPYTFTTSSTTPSWDY 774
Query: 723 ENQKDTHANLFPKEQPQLVANDLVD-----------DLPVRGTKS------LEDIY---- 761
+ T + P P + L LP T++ L+D
Sbjct: 775 FSPSTTETSHSPNNTPSTPSASLPHTQSSSPSVPVSHLPRHSTRNKISPSYLQDYVCNSI 834
Query: 762 ------------------ERCSLVV-----NEPTRYAEAQXFQPWRRAMKAELEMINKNE 798
S V+ NEP YAEA + W++AM+ EL+ + +
Sbjct: 835 NSTTYPISHYLSHNKLSSHHSSYVLSLHTHNEPKTYAEANKHECWQKAMQVELQALEQTG 894
Query: 799 IWQLVDRRANRKVIGVKRVFKTKFNSDGSICKHKARLVVKGYAQQYGVDYXETFAPVARY 858
W VD N K IG + VFK K ++DGSI ++KARLV KGY Q G+DY +TF+PVA+
Sbjct: 895 TWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKL 954
Query: 859 DTIKLLLTFAAHNSWQIHQLDVKSAFLNGFLNEEIFVEQPDDFLIPRKEDQVYFLNKALY 918
T++L++ A+ N W +HQLDV +AFL+G L E +++ P + + + V LNK+LY
Sbjct: 955 TTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYMTLPPG-ISAKHSNTVCKLNKSLY 1013
Query: 919 GLKQAPRAWYERMDNYLMQLGFSRSQSEATLYVRNTDDEFLVVSIYVDDMLVTGSKLELI 978
GLKQA R WY+++ + L++ ++++ S+ +L+ + T + ++ +YVDD+++ G LE
Sbjct: 1014 GLKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEF 1073
Query: 979 QKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFISQQKYISDILYRFKMQDCKPVSTP 1038
Q K+ ++ +F++ DLG +K+FLG+EV + G + Q+KY D+L KP STP
Sbjct: 1074 QYIKSILDTLFKIKDLGQLKFFLGLEVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTP 1133
Query: 1039 ISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILLAVSLLSRFMHLPRETHFTAA 1098
LKL KD D YR LIG LLYL +RPDI LS+F+ P TH +AA
Sbjct: 1134 SDPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSAA 1193
Query: 1099 KRVLRYIKGTSTFGMFFAAIAGESLKLVGYCDSDWGGCIEDSRSTSGYLFSLGTSFFSWS 1158
RVLRY+K G+FF L+L GY D+DW GC++ RS SG F LG S SW
Sbjct: 1194 LRVLRYLKNCPGKGLFFP--RNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWR 1251
Query: 1159 SKKQETTAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNP 1218
+KKQ T ++S+++AEY A ASA + WL +L+DL T+ + CDN SA+ I+ NP
Sbjct: 1252 TKKQVTVSRSSSEAEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANP 1311
Query: 1219 VFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTKVIPKERF 1267
VFH RTKH++I H +RE S + L+ SS+ Q+AD FTK + + F
Sbjct: 1312 VFHERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVADFFTKSLHPQPF 1360
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/516 (41%), Positives = 315/516 (61%), Gaps = 3/516 (0%)
Query: 770 EPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSIC 829
EPT Y EA W +AM+AEL + K W +VD A K IG + ++K K N+DGSI
Sbjct: 738 EPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIE 797
Query: 830 KHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFL 889
++KARLV KGY Q G+DY ET++PVA+ T++L++ A+ ++W +HQLDV +AFL+G L
Sbjct: 798 RYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLHGEL 857
Query: 890 NEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATL 949
E++++ P I K QV L K+LYGLKQA R WYE++ + L+Q + ++ S+ +L
Sbjct: 858 QEDVYMILPPGINI-AKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDHSL 916
Query: 950 YVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTN 1009
+++ + D F ++ +YVDD+++ G+ L Q K+ ++ F++ DLG +KYFLG+EV +
Sbjct: 917 FIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAHSK 976
Query: 1010 DGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYL 1069
G + Q+KY D+L+ KP+STP KL D +T D YR L+G LLYL
Sbjct: 977 LGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLLYL 1036
Query: 1070 TASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLVGYC 1129
+RPDI LS+F+ P H AA R LRY+K G+FF SL L G+
Sbjct: 1037 NNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFP--RNSSLTLQGFS 1094
Query: 1130 DSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAIWLRK 1189
D+DW GC++ +S +G F LG S SW +KKQ T ++S+++AEY A ASA + WL
Sbjct: 1095 DADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLY 1154
Query: 1190 MLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCS 1249
+L DL ++ + CDN SA+ I+ NPVFH RTKH++I H +RE Q+ + L+ S
Sbjct: 1155 LLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVS 1214
Query: 1250 SENQLADIFTKVIPKERFEDLRQRIGVCHRNAKEEC 1285
S++Q+AD FTK + + F L ++G+ + C
Sbjct: 1215 SQDQIADFFTKALLPKTFSLLLSKLGLIDIYQRPTC 1250
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 5/185 (2%)
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +R DNG E+ + F S GI H + TPQQN ERK++ ++ + R LL + +
Sbjct: 459 KTIRIDNGPEFMLKDFY---ASHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSK 515
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P F + AV +V+L+NR+ T L +++PY ++ P++ K+FGC+CY ++ R
Sbjct: 516 LPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHR 575
Query: 675 SKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDEAAGWCWENQKDTHA--NL 732
+KL +RA+K IF+GY S K Y +F L +I +SR V F E +N T A N
Sbjct: 576 TKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYHKNPSSTTADWNY 635
Query: 733 FPKEQ 737
+P Q
Sbjct: 636 YPSSQ 640
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/516 (40%), Positives = 319/516 (61%), Gaps = 3/516 (0%)
Query: 770 EPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSIC 829
EP YAEA W+ AM+ EL+ + K W+LVD N K IG + ++K KF++DG++
Sbjct: 892 EPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVE 951
Query: 830 KHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFL 889
++KARLV KGY Q G+DY +T++PVA+ T++L++ ++ N+W +HQLDV +AFL+G L
Sbjct: 952 RYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDL 1011
Query: 890 NEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATL 949
E++++ P + K +QV L K+LYGLKQA R WYE++ + L ++++ S+ +L
Sbjct: 1012 QEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDYSL 1070
Query: 950 YVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTN 1009
+V+ T F V+ +YVDD+++ G+ + K+ ++ +F++ DLG +KYFLG+EV +
Sbjct: 1071 FVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEVAHSK 1130
Query: 1010 DGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYL 1069
G + Q+KY D+L KP+STP + +KL D ++ D R L+G LLYL
Sbjct: 1131 LGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLLYL 1190
Query: 1070 TASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLVGYC 1129
+RPDI LS+F+ P + H +AA RVL+Y+K G+FF SL L G+
Sbjct: 1191 NNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFP--RSSSLNLQGFS 1248
Query: 1130 DSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAIWLRK 1189
D+DW GCI+ RS SG F LG S SW +KKQ T ++S+++AEY A ASA + W+
Sbjct: 1249 DADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILY 1308
Query: 1190 MLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCS 1249
+LKDL + + CDN SA+ I+ NPVFH RTKH++I H IR+ QS + L+ S
Sbjct: 1309 LLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVS 1368
Query: 1250 SENQLADIFTKVIPKERFEDLRQRIGVCHRNAKEEC 1285
S++Q+AD FTK + + F L ++G+ + C
Sbjct: 1369 SQDQVADFFTKALLPKPFNILLSKLGLINIYQPPTC 1404
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLV 494
RLGH +++ + +S L+ ++I + +C++C K LPF +N
Sbjct: 539 RLGHLSKQRLQTLS---LLYPSIKID-NKAICDLCHFAKHKHLPFTSN------------ 582
Query: 495 HTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKI 554
D +R W+ +K K+EV K F +++N +
Sbjct: 583 ------------------------DHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTP 618
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +R+DNG E+ + L S GI HQ + TPQQN ERK++ ++ + R LL + +
Sbjct: 619 KFIRTDNGPEF---MLSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSK 675
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P + A+ +V+L+NR+PT L +++PY + P K+FGC+CY +S
Sbjct: 676 LPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHT 735
Query: 675 SKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
+KL +RA+K IF+GY S K + ++ L +I +SR V F E
Sbjct: 736 TKLKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHE 777
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/507 (42%), Positives = 309/507 (60%), Gaps = 3/507 (0%)
Query: 770 EPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSIC 829
EPT YAEA F W++AM+ EL + W+LVD N K I + ++K K ++DGSI
Sbjct: 883 EPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIE 942
Query: 830 KHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFL 889
++KARLV KGY Q G+DY +T++PVA+ T++ ++ A N+W IHQLDV +AFL+G L
Sbjct: 943 RYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDL 1002
Query: 890 NEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATL 949
E++++ P + P K +QV L K+LYGLKQA R WYE++ + L+ + +S S+ +L
Sbjct: 1003 QEDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSDHSL 1061
Query: 950 YVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTN 1009
+++ T F + +YVDD+++TG+ L Q K + E+ DLG +KYFLG+EV ++
Sbjct: 1062 FIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVAHSS 1121
Query: 1010 DGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYL 1069
G + Q+KY D+L KP STP KL D D YR LIG L+YL
Sbjct: 1122 QGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRLIYL 1181
Query: 1070 TASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLVGYC 1129
T +RP I A LS+F++ P E H+ AA R+LRY+K + G+FF SL L GY
Sbjct: 1182 TNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFP--RDSSLFLSGYS 1239
Query: 1130 DSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAIWLRK 1189
D+DW GC++ RS SG F LG S SW +KKQ T ++S+++AEY A +A + WL
Sbjct: 1240 DADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLY 1299
Query: 1190 MLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCS 1249
+L DL + + CDN SA+ I+ NPVFH RTKH++I H +RE Q+ + L+ +
Sbjct: 1300 LLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVT 1359
Query: 1250 SENQLADIFTKVIPKERFEDLRQRIGV 1276
S +QLAD FTK + + F L ++G+
Sbjct: 1360 SADQLADFFTKPLLPQPFHTLLFKLGM 1386
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 153/281 (54%), Gaps = 8/281 (2%)
Query: 436 LGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLVH 495
LGH + + + MS Y + C+ICQ KQ KL F T+ + A+ K +L+H
Sbjct: 488 LGHVSNKRLNHMSH----LYPTLTVDNHATCDICQFAKQKKLSFPTSVS-VASSKFELLH 542
Query: 496 TDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKIK 555
D+ GP+ S+ + YFL +DD + W+ +K K EV K F L+ Q ++ K
Sbjct: 543 FDIWGPLAVTSIHNHRYFLTILDDYSIFFWIVLLKSKYEVSQHVKNFINLIHTQYHITPK 602
Query: 556 ALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQM 615
+RSDNG E+ F S GI H + TPQQN ERK++ ++ + R LL + ++
Sbjct: 603 VVRSDNGPEFLLNSFY---ASKGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKL 659
Query: 616 PNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKRS 675
P+ + + A+ +++++NR+ + L +K+PY+ + P + K+FG +CY +S R+
Sbjct: 660 PSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRT 719
Query: 676 KLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
KL RA+K +F+GY K Y + + +I +SR V+F E
Sbjct: 720 KLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQFHE 760
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 296 bits (758), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 208/664 (31%), Positives = 326/664 (49%), Gaps = 143/664 (21%)
Query: 605 MARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCI 664
M R +L EK++P++F AVNT+ Y+LNR PTK ++DK P E W KP+I ++K+FG I
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 665 CYYQVSKSKRSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDEAAGWCW-- 722
Y V S+R KL+++ + I +GY ++ YR+ L +KI ++RDVK E W W
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGYHNTG-AYRLLDLHSKKISITRDVKVLEEEYWDWNS 119
Query: 723 ------------ENQKDTHANLFPKE---------QPQLVANDLVDDLPVRGTKSLEDIY 761
EN+K++ L +E +P +A P R + L +
Sbjct: 120 NECSVYEKNVIIENKKESDELLTNEEVISEEVSYEEPTTIAR------PQRNKQMLRRL- 172
Query: 762 ERCSLVVN-------EPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGV 814
+ C + + E +A +P + L+ KN+ W+L+ +K I V
Sbjct: 173 QDCQVTGDDEIGSDGELVHFAMLVDTKPLYK-----LKSSGKNQTWELIKLTDGKKAIDV 227
Query: 815 KRVFKTKFNSDGSICKHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSWQ 874
K VFK K N +G I KHKARL VAR
Sbjct: 228 KWVFKLKLNPEGKIVKHKARL-------------------VARV---------------- 252
Query: 875 IHQLDVKSAFLNGFLNEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNY 934
FL +E F D+ + V+ LNKALYGLKQAPRAW +R++ +
Sbjct: 253 -------------FLKKEGF-----DY-----TEVVFKLNKALYGLKQAPRAWNKRIEKF 289
Query: 935 LMQLGFSRSQSEATLYVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDL 994
++ GF + +E +YV+ ++ L++
Sbjct: 290 FVEQGFKKCLAEHGVYVKGSEGTSLLI--------------------------------- 316
Query: 995 GIMKYFLGMEVLQTNDGFFISQQKYISDILYRFKMQDCKP-VSTPISTGLKLGKDENTEK 1053
+ +E+L+T G ++Q KY ++I +F M D ++ + + K+E+ +
Sbjct: 317 ------ICLEILRTTKGLILNQTKYDTEIQKKFNMLDFNSSITLAYANNINEVKEED-KG 369
Query: 1054 VDTILYRSLIGSLLYLTASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGM 1113
VD + R LIG L YL SR DI +V ++S+FM P +THF AAK+++RYI GT +G+
Sbjct: 370 VDPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGI 429
Query: 1114 FFA-AIAGESLKLVGYCDSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKA 1172
F A E L ++ Y D+DW D R T+ +LF L + SWSSKKQ A S+ +
Sbjct: 430 LFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEV 489
Query: 1173 EYIATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFH 1232
EY+ +SA QA WL+ +L+ + + K++ DN A++++KN + HG++KHI+ KFH
Sbjct: 490 EYVVGSSAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFH 549
Query: 1233 FIRE 1236
++R+
Sbjct: 550 YLRD 553
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 288 bits (736), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 212/351 (60%), Gaps = 1/351 (0%)
Query: 770 EPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSIC 829
EP Y EA W++AM E ++ N W L + ++K +G + V+K K +DGS+
Sbjct: 335 EPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADGSVE 394
Query: 830 KHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFL 889
++KARLVVKGY Q +G+DY ETF+PV + T++ L+ AA W IHQLDV +AFL+G L
Sbjct: 395 RYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDL 454
Query: 890 NEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATL 949
+EE++++ P P K D V LNK+LYGLKQA R WYE++ L G+ S + +L
Sbjct: 455 HEEVYMDIPPGLATPHK-DLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDYSL 513
Query: 950 YVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTN 1009
+ + + + +YVDD+L+TG+ I + K ++ F++ DLG + YFLG+EVL +
Sbjct: 514 FYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFLGLEVLYKD 573
Query: 1010 DGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYL 1069
DG +SQ+K++ D+L F P+S+P+ +KL E D YR LIG L +L
Sbjct: 574 DGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRKLIGKLNFL 633
Query: 1070 TASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAG 1120
T +R D+ V LLS++M PRE H AA +LRY+K T G+F ++ A
Sbjct: 634 THTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAAN 684
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 121/263 (46%), Gaps = 50/263 (19%)
Query: 472 GKQSKLPFQTNQAWRANXKLQLVHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKL 531
+QS+LPF + +L+H D+ GP T + YF+ +DD ++ W +
Sbjct: 2 ARQSRLPFPP-KTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSC 60
Query: 532 KSEVFDVFKQFKALVENQCNLKIKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQ 591
KS F V K F +VENQ + +K +RSDNG E+TS + +S GI HQ + PYTPQQ
Sbjct: 61 KSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQ 120
Query: 592 NRVFERKNRTVIEMARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDH 651
N V ERK++ ++E AR LL + ++P ++ W
Sbjct: 121 NGVVERKHKFILETARALLFQSKLPVKY----------------------------W--- 149
Query: 652 KPTIHHIKIFGCICYYQVSKSKRSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRD 711
S+ R+K D + +F+GY + K Y++ L +KI +SRD
Sbjct: 150 ------------------SEFHRTKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRD 191
Query: 712 VKFDEAAGWCWENQKDTHANLFP 734
V F E ++ TH FP
Sbjct: 192 VIFHETIFPFAMSKDPTHFPKFP 214
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/511 (33%), Positives = 249/511 (48%), Gaps = 101/511 (19%)
Query: 769 NEPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSI 828
NEP Y EA F+ WR+AM+ EL + W+++D N K IG + ++K K N+D +I
Sbjct: 290 NEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHNADDTI 349
Query: 829 CKHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSW--QIHQLDVKSAFLN 886
++KARLV KGY Q G+DY +T++PVA++ TI+L A W ++ L V +
Sbjct: 350 ERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRL-----ASRKWYEKLASLLVNHGYKQ 404
Query: 887 GFLNEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSE 946
+ +F++ S ++
Sbjct: 405 ASADHSLFIKH---------------------------------------------STTQ 419
Query: 947 ATLYVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVL 1006
T + DD +++ G+ L+ KN + F++ DLG +KYFLG+EV
Sbjct: 420 FTALLVYVDD-----------IILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLGLEVA 468
Query: 1007 QTNDGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSL 1066
+ G + Q+KY D+L + D KPV+TP +KL D++ D YR L+G L
Sbjct: 469 HSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPLYTDIPAYRRLVGRL 528
Query: 1067 LYLTASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLV 1126
LYL A+RPDI LS+F+ P +TH+ AA RVLRY+K G+ F SL +
Sbjct: 529 LYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPR---SSLPYI 585
Query: 1127 -GYCDSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAI 1185
GY D+DW GC + RS SG F LG S SW +KKQ T ++S+++AEY A +A
Sbjct: 586 QGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRALGAA----- 640
Query: 1186 WLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLL 1245
+ NPVFH RTKH++I H +RE + + L
Sbjct: 641 -----------------------------TSNPVFHERTKHLEIDCHIVREKLAAGIMKL 671
Query: 1246 VHCSSENQLADIFTKVIPKERFEDLRQRIGV 1276
+ SS+NQLAD FTK I + F L ++G+
Sbjct: 672 LPISSKNQLADCFTKSILPQPFNSLLFKLGL 702
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 545 LVENQCNLKIKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIE 604
++ENQ ++ K +R+DNG E+ +F S GI HQ + TPQQN ERK++ ++
Sbjct: 1 MIENQFHVTPKIIRTDNGSEFLLHEFYA---SKGILHQRSCVETPQQNGRVERKHQHILN 57
Query: 605 MARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCI 664
+ R LL + ++P F + A +V+L+NR+PT L + +PY YD P I K+FGC+
Sbjct: 58 IGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCL 117
Query: 665 CYYQVSKSKRSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
CY +S R+KL+ RA+K +F+GY K Y ++ L +I +SR V F E
Sbjct: 118 CYASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHE 169
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 187/318 (58%), Gaps = 16/318 (5%)
Query: 959 LVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFISQQK 1018
+ V IYVDD+++ G+ + I FK +++ F M DLG +KYFLG+E+ + +G F+ Q+K
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRK 60
Query: 1019 YISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILL 1078
Y DIL KM DCKP + P+ KL D+ D YR LI L+YLT P+I
Sbjct: 61 YTLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITY 120
Query: 1079 AVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLVGYCDSDWGGCIE 1138
+V +L+ RVLRY+K + G+ L+LV YCDSDW C
Sbjct: 121 SVHILTM--------------RVLRYLKSSPGQGIILPK--ENDLQLVAYCDSDWASCPL 164
Query: 1139 DSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQ 1198
RSTSGYL LG++ SW +KKQ T ++S+++AEY A AV++ IWLR +L LQ
Sbjct: 165 TRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHY 224
Query: 1199 TEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIF 1258
T ++CDN +A+ ++ NPV+H RTKHI++ HFIR Q + + ++ Q ADIF
Sbjct: 225 DSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIF 284
Query: 1259 TKVIPKERFEDLRQRIGV 1276
TK + ++F++L ++GV
Sbjct: 285 TKALGAKQFQELTFKLGV 302
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 180/291 (61%), Gaps = 3/291 (1%)
Query: 787 MKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSICKHKARLVVKGYAQQYGV 846
M++E+ + + W++VD K IG + +FK K N DGSI ++KARLV KGY Q G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 847 DYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFLNEEIFVEQPDDFLIPRK 906
DY +T++PVA+ T++ ++ A+ N W +HQ DV +AFL+G L E++++ P +P
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG--VPHS 118
Query: 907 -EDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATLYVRNTDDEFLVVSIYV 965
+D+V LNK+LYGL+QA WYE++ N L+ G+ ++ S+A+L++++T F ++ +YV
Sbjct: 119 HQDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYV 178
Query: 966 DDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFISQQKYISDILY 1025
DD+++ G L K + F++ D+G +KYFLG+EV + G + Q+KY D+L
Sbjct: 179 DDVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLE 238
Query: 1026 RFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDI 1076
+ KP++TP +KL D D YR LIG LLYL +RPDI
Sbjct: 239 DSGLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDI 289
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 206 bits (524), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 164/282 (58%), Gaps = 8/282 (2%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLV 494
RLGH + + ++ MS+ Y I + C+IC + KLPF + + AN K QL+
Sbjct: 515 RLGHLSNQRLSTMSR----LYPSIIVDNKAACDICHFARHKKLPFPHSSS-HANSKFQLL 569
Query: 495 HTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKI 554
H D+ GP+ + G+ YFL +DD TR W+ +K K+EV K F AL+ENQ ++
Sbjct: 570 HFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITP 629
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +R+DNG E+ F S GI HQ + TPQQN ERK++ ++ + R LL + +
Sbjct: 630 KIIRTDNGSEFLLHDFY---ASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSK 686
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P F + A +V+L+NR+PT LQ+++PY+ YD P + K+FGC+CY +S R
Sbjct: 687 LPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHR 746
Query: 675 SKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
+KL+ RA+K +F+GY S K ++ L +I +SR V F E
Sbjct: 747 TKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHE 788
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 92/129 (71%)
Query: 770 EPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSIC 829
EP Y EA F+ WR+AM+ EL + W+++D +N K IG + ++K K ++DG+I
Sbjct: 911 EPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIE 970
Query: 830 KHKARLVVKGYAQQYGVDYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFL 889
++KARLV KGY Q G+DY +T++PVA++ TI+L+L A+ N+W +HQLDV +AFL+G L
Sbjct: 971 RYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDL 1030
Query: 890 NEEIFVEQP 898
E+++++ P
Sbjct: 1031 QEDVYMDIP 1039
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 152/260 (58%), Gaps = 2/260 (0%)
Query: 949 LYVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQT 1008
++ ++TD F ++ +YVDD+++ G+ L Q K+ + F++ DLG +KY LG+EV +
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 1009 NDGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLY 1068
G + Q+KY D+L + KPVST LKL D + D YR LIG LLY
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 1069 LTASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLVGY 1128
L ++RPDI LS+F+ P +TH AA RVL+Y+K G+FF SL L G+
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFP--RNSSLHLQGF 178
Query: 1129 CDSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAIWLR 1188
D DW GC++ RS SG F +G S SW +KKQ T ++S+++AEY A ASA + W+
Sbjct: 179 SDVDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWIL 238
Query: 1189 KMLKDLQCEQTEATKIMCDN 1208
+LKDL + ++ + CDN
Sbjct: 239 YLLKDLNIQSSKLPVLFCDN 258
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 165/283 (58%), Gaps = 10/283 (3%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQ-VCEICQQGKQSKLPFQTNQAWRANXKLQL 493
RLGH + + M + + I D+ VC+IC + KLPF+ + +A+ +L
Sbjct: 468 RLGHLSNDRLLRMQQ-----HFPCIKVDSNSVCDICHYSRHKKLPFKLSMN-KASHCYEL 521
Query: 494 VHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLK 553
+H D+ GP++T S+ G+ YF+ +DD +R W+ K KSEV + F +ENQ N K
Sbjct: 522 IHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCK 581
Query: 554 IKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEK 613
+K +R+DNG E+ F S GIEHQ + TPQQN ERK++ ++ +AR LL +
Sbjct: 582 VKTVRTDNGPEFLMPDFYS---SKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQS 638
Query: 614 QMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSK 673
++P F + +V ++Y++NR+PT LQ+K+PY Y H P +++ K+FGC+ Y +
Sbjct: 639 KLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNH 698
Query: 674 RSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
R+K D+RA+K +F+GY K ++ L + I SR+V + E
Sbjct: 699 RTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHE 741
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 151/255 (59%), Gaps = 8/255 (3%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLV 494
RLGH + + ++ MS+ Y I + C+IC + KLPF + + AN K QL+
Sbjct: 515 RLGHLSNQRLSTMSR----LYPSIIVDNKAACDICHFARHKKLPFPHSSS-HANSKFQLL 569
Query: 495 HTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKI 554
H D+ GP+ + G+ YFL +DD TR W+ +K K+EV K F AL+ENQ ++
Sbjct: 570 HFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITP 629
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +R+DNG E+ F S GI HQ + TPQQN ERK++ ++ + R LL + +
Sbjct: 630 KIIRTDNGSEFLLHDFYA---SKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSK 686
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P F + A +V+L+NR+PT LQ+++PY+ YD P + K+FGC+CY +S R
Sbjct: 687 LPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHR 746
Query: 675 SKLDNRAKKGIFMGY 689
+KL+ RA+K +F+GY
Sbjct: 747 TKLETRARKSVFLGY 761
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 165/283 (58%), Gaps = 10/283 (3%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQ-VCEICQQGKQSKLPFQTNQAWRANXKLQL 493
RLGH + + M + + I D+ VC+IC + KLPF+ + +A+ +L
Sbjct: 538 RLGHLSNDRLLRMQQ-----HFPCIKVDSNSVCDICHYSRHKKLPFKLSMN-KASHCYEL 591
Query: 494 VHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLK 553
+H D+ GP++T S+ G+ YF+ +DD +R W+ K KSEV + F +ENQ N K
Sbjct: 592 IHFDIWGPISTHSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCK 651
Query: 554 IKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEK 613
+K +R+DNG E+ F S GIEHQ + TPQQN ERK++ ++ +AR LL +
Sbjct: 652 VKTVRTDNGPEFLMPDFYS---SKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQS 708
Query: 614 QMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSK 673
++P F + +V ++Y++NR+PT LQ+K+PY Y H P +++ K+FGC+ Y +
Sbjct: 709 KLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNH 768
Query: 674 RSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
R+K D+RA+K +F+GY K ++ L + I SR+V + E
Sbjct: 769 RTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHE 811
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 146/251 (58%), Gaps = 4/251 (1%)
Query: 466 CEICQQGKQSKLPFQTNQAWRANXKLQLVHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCW 525
C++C + KLPF + + ++ K QL+H D+ GP+ S+ G+ YFL +DD TR W
Sbjct: 16 CDVCHFARHKKLPFSHSSSHASS-KFQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLW 74
Query: 526 VYFIKLKSEVFDVFKQFKALVENQCNLKIKALRSDNGGEYTSRQFAELCKSAGIEHQLTV 585
+ +K K+EV K F ++ENQ ++ K +R+DNG E+ +F S GI HQ +
Sbjct: 75 IILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEFLLHEFYA---SKGILHQSSC 131
Query: 586 PYTPQQNRVFERKNRTVIEMARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPY 645
TPQQN ERK++ ++ + R LL + ++P F + A +V+L+NR+ T L + +PY
Sbjct: 132 VETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPY 191
Query: 646 EAWYDHKPTIHHIKIFGCICYYQVSKSKRSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEK 705
YD P I K+FGC+CY +S +KL+ RA+K +F+GY K Y ++ L +
Sbjct: 192 HLLYDSPPDITTFKVFGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTRE 251
Query: 706 IILSRDVKFDE 716
I +SR V F E
Sbjct: 252 IFISRHVVFHE 262
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 769 NEPTRYAEAQXFQPWRRAMKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSI 828
NEP Y EA F+ WR+AM+ EL + W+++D N K IG + ++K K ++DG+I
Sbjct: 383 NEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTI 442
Query: 829 CKHKARLVVKGYAQ 842
++KARLV KGY Q
Sbjct: 443 ERYKARLVAKGYNQ 456
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 157/283 (55%), Gaps = 10/283 (3%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQV-CEICQQGKQSKLPFQTNQAWRANXKLQL 493
RLGH + + + MS+ ++ D C+IC KQ KLPF +N A+ K +L
Sbjct: 495 RLGHVSPKRLIHMSQ-----LYPTLTVDVHATCDICHFAKQKKLPF-SNSISVASIKFEL 548
Query: 494 VHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLK 553
+H D+ GP++ S+ + YFL +DD +R W+ +K KSEV K F L++ Q N+
Sbjct: 549 LHFDIWGPLSITSIHNHRYFLTILDDYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNIT 608
Query: 554 IKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEK 613
K +RSDNG E+ F S GI H + TPQQN ERK++ ++ + R LL +
Sbjct: 609 PKTVRSDNGPEFLLHSFY---ASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQS 665
Query: 614 QMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSK 673
++P + + A+ + +++NR+ + L +K+PY+ +D P H K+FG +CY S
Sbjct: 666 KLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSH 725
Query: 674 RSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
R+KL RA+K +F+GY K Y + + +I +SR V+F E
Sbjct: 726 RTKLSARARKSVFLGYTVGFKGYVLLDIHTREIHISRHVQFYE 768
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 150/257 (58%), Gaps = 8/257 (3%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLV 494
RLGH + + M+K + Y + +S T C++CQ +Q LPF + + A LV
Sbjct: 540 RLGHLSHDRMICMNK--MYSY-VPVSPHT-ACDVCQMCRQKILPFPIS-SRNAKTAFDLV 594
Query: 495 HTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKI 554
H D+ GP +T S+ G+ YFL +DD TR W+ +K KSE K F ++VE Q KI
Sbjct: 595 HFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKI 654
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +RSDNG E+ R+F + GI HQ + YTPQQN ER+++ ++ ++R L+ + +
Sbjct: 655 KMIRSDNGPEFMLREFYD---KKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSK 711
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P F + AV +VYL+NR+PTK L +K+ YE Y+ P + +K+FGC+ Y R
Sbjct: 712 LPKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNR 771
Query: 675 SKLDNRAKKGIFMGYGS 691
K D +A+K F+G+ S
Sbjct: 772 YKFDPKARKCAFLGFKS 788
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 170/380 (44%), Gaps = 84/380 (22%)
Query: 873 WQIHQLDVKSAFLNGFLNEEIFVEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMD 932
W D + FL+G L E++++ P PR QV L K+LYGLKQA R W+E++
Sbjct: 198 WIFRLNDANNTFLHGDLQEDVYMHPPQGVSPPRP-GQVCKLLKSLYGLKQASRRWFEKLI 256
Query: 933 NYLMQLGFSRSQSEATLYVRNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMT 992
+ L+ +GF ++ ++ + +R + F + IYV
Sbjct: 257 SLLLTIGFVQASADHSFLIRASPTSFTALLIYV--------------------------- 289
Query: 993 DLGIMKYFLGMEVLQTNDGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTE 1052
++ G + Q+KY D+L + CK VSTP+ L D+
Sbjct: 290 -------------AHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPP 336
Query: 1053 KVDTILYRSLIGSLLYLTASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFG 1112
D + YR LIG LLYLT +RPDI A LS+FM P H A VLRY++ G
Sbjct: 337 FDDVLAYRCLIGCLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRG 396
Query: 1113 MFFAAIAGESLKLVGYCDSDWGGCIEDSRSTS------GYLFSL--GTSFFSWSSKKQET 1164
+FF + ++L+G+ D+DWGGC++ RS + +LF L G S FS S +
Sbjct: 397 LFFPRTS--EMQLLGFSDADWGGCVDSRRSLAFQEAIHRFLFFLRSGISCFSISHPRTPM 454
Query: 1165 TAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRT 1224
+ + CDN SA+ I+ NPVF+ RT
Sbjct: 455 A--------------------------------HIRLSILYCDNQSALHIAANPVFYERT 482
Query: 1225 KHIKIKFHFIRE-VQQSNEV 1243
KH+ I H +RE VQ+ ++
Sbjct: 483 KHLDIDCHIVREKVQRGSDA 502
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 127/206 (61%), Gaps = 4/206 (1%)
Query: 482 NQAWR-ANXKLQLVHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFK 540
N+A+ A+ K +L+H D+ GP++ S+ G+ YFL +DD +R WV +K KSEV + K
Sbjct: 567 NKAYSIASSKFELLHFDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVK 626
Query: 541 QFKALVENQCNLKIKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNR 600
F L+ + K +RSDNG E+ E S GI HQ + TPQQN ERK++
Sbjct: 627 NFVVLIHTHYQITPKYIRSDNGPEFL---IPEFYASKGIIHQKSCVETPQQNGRVERKHQ 683
Query: 601 TVIEMARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKI 660
++ +AR LL + ++PN F + AV +V+L+N++PT + K+PY+ YD P I+ K+
Sbjct: 684 HILNVARALLFQSKLPNFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKV 743
Query: 661 FGCICYYQVSKSKRSKLDNRAKKGIF 686
FGC+C+ ++RSKL +RA+K IF
Sbjct: 744 FGCLCFASTLLAQRSKLQSRARKSIF 769
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 144/284 (50%), Gaps = 45/284 (15%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQ-VCEICQQGKQSKLPFQTNQAWRANXKLQL 493
RLGH + + +++M +I D + +C+IC KQ KLP+ ++ + ++ +L
Sbjct: 448 RLGHLSNQRLSQMHH-----LYPDIHVDNKFICDICHFAKQRKLPYNSSTSIASS-NFEL 501
Query: 494 VHTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLK 553
++ D+ GP+ S+ G YFL +DD +R W K KSEV + F L++N+ +
Sbjct: 502 LYLDIWGPLAKVSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVT 561
Query: 554 IKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEK 613
K +RSDNG + F S GI HQ + TPQ N
Sbjct: 562 PKIIRSDNGHVFLLSAFY---ASQGIIHQRSCVETPQHN--------------------- 597
Query: 614 QMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSK 673
V+L+NR+PT L++K+PY+ Y P I+ K+FGC+CY +S
Sbjct: 598 --------------VFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSH 643
Query: 674 RSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDEA 717
R+KL +RA+K +F+GY S K ++ L ++I +SR+V F E+
Sbjct: 644 RTKLQSRARKSVFLGYKSGYKGSFLYDLNTKEIFMSRNVTFHES 687
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 149/282 (52%), Gaps = 22/282 (7%)
Query: 435 RLGHFNQRTITEMSKNGLVKYMLEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLV 494
+LGH + + + MS L ++ + ++ VC+IC KQ LPF + + A +L+
Sbjct: 470 KLGHLSHQRMNMMS--SLYSNIVSDNKNS-VCDICHFAKQKHLPFSISTS-HATSNFELL 525
Query: 495 HTDMCGPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKI 554
H D+ GP++ S+ G+ YFL +DD +R W+ +K KS V K F +V+ Q ++
Sbjct: 526 HLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFHVTP 585
Query: 555 KALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQ 614
K +RSDNG E+ F E S GI HQ + TPQQN ERK+ ++ + R LL + +
Sbjct: 586 KCIRSDNGPEFLILSFYE---SLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSK 642
Query: 615 MPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTIHHIKIFGCICYYQVSKSKR 674
+P + + A+ +V+L+NR PT L+ ++PY A + P I K
Sbjct: 643 LPASYWSYALLHAVFLINRKPTPLLEGQSPYYALHHKFPDIDTFK--------------- 687
Query: 675 SKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIILSRDVKFDE 716
++ RA+K +F+GY S K + + + +I +SR V F E
Sbjct: 688 NQASTRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHE 729
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 150 bits (380), Expect = 3e-36, Method: Composition-based stats.
Identities = 97/316 (30%), Positives = 150/316 (47%), Gaps = 68/316 (21%)
Query: 963 IYVDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVL-QTNDGFFISQQKYIS 1021
+YV DM+VTG+ L+Q+ + + F + DLG +KYFLG+EV Q+N I+Q KY+
Sbjct: 3 VYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKYVR 62
Query: 1022 DILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILLAVS 1081
D+L + MQ+ K + +P+ + LKL KD +T D L RS++ +L Y P
Sbjct: 63 DLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP------- 115
Query: 1082 LLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAIAGESLKLVGYCDSDWGGCIEDSR 1141
VLR++KGT ++G+ I L ++ YCD+DWG D R
Sbjct: 116 ----------------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGS-DPDDR 158
Query: 1142 STSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQTEA 1201
S +F LG + SW +KKQ A+S+ +AEY + A A ++ +W++
Sbjct: 159 SVDACVF-LGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIK------------- 204
Query: 1202 TKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTKV 1261
+ R K I+ K F+ V + ++ DI TK
Sbjct: 205 -----------------TYGARLKVIQKKL-FVSNV-----------PGQVKVVDIMTKA 235
Query: 1262 IPKERFEDLRQRIGVC 1277
+P RFE LR ++ VC
Sbjct: 236 LPPTRFEGLRTKLTVC 251
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 128 bits (321), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/133 (43%), Positives = 84/133 (63%)
Query: 457 LEISYDTQVCEICQQGKQSKLPFQTNQAWRANXKLQLVHTDMCGPMTTKSLSGNNYFLLF 516
L + + C IC GK S+ F++ RA L +VH+D+ GP+ + SGN YF+ F
Sbjct: 6 LNVKIVEKSCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITF 65
Query: 517 IDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKIKALRSDNGGEYTSRQFAELCKS 576
+D+ ++M W+Y IKLKS+ +VFK+FK L E Q +K+K L + GGEYTS+ F C +
Sbjct: 66 VDEYSKMLWLYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSKDFESYCTN 125
Query: 577 AGIEHQLTVPYTP 589
GI H++T PYTP
Sbjct: 126 QGIIHEVTTPYTP 138
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Query: 500 GPMTTKSLSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKIKALRS 559
GP++ S+ G+ YFL +DD TR WV +K K+EV K F +++N + K +R+
Sbjct: 523 GPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFIRT 582
Query: 560 DNGGEYTSRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQMPNQF 619
DNG E+ F S GI HQ + TPQQN ERK++ ++ + R LL + ++P F
Sbjct: 583 DNGPEFMLPSFY---ASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSF 639
Query: 620 XAEAVNTSVYLLNRLPTKALQDKTPYEAWYDHKPTI 655
+ A++ +V+L+NR+PT L +++PY + P I
Sbjct: 640 WSYAIHHAVFLINRVPTPLLHNQSPYFLLHHKLPDI 675
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 95/188 (50%), Gaps = 39/188 (20%)
Query: 529 IKLKSEVFDVFKQFKALVENQCNLKIKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYT 588
+K +S+ FKQ AL+ENQ K+K L+ DNG E+ +F E CK+ GI V T
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNT 60
Query: 589 PQQNRVFERKNRTVIEMARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEAW 648
PQQN V +R N+T++E ARC+L + F E
Sbjct: 61 PQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGETG------------------------ 96
Query: 649 YDHKPTIHHIKIFGCICYYQVSKSKRSKLDNRAKKGIFMGYGSSCKEYRIFCLKIEKIIL 708
FGC YY+V++ KL++RAKK +F+GYG KEYRI+ ++IL
Sbjct: 97 ------------FGCTVYYRVNE---GKLESRAKKRVFVGYGDGVKEYRIWSPSENRVIL 141
Query: 709 SRDVKFDE 716
SR+V FDE
Sbjct: 142 SRNVVFDE 149
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 1100 RVLRYIKGTSTFGMFFAAIAGESLKLVGYCDSDWG-GCIEDSRSTSGYLFSLGTSFFSWS 1158
RVL Y+KG G+FF SL++ GY ++DW GC + RS S FF WS
Sbjct: 2 RVLSYLKGCPGKGLFFPR--QSSLQIQGYTNADWAVGCKDTRRSISE------QCFFCWS 53
Query: 1159 SKKQETTAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNP 1218
S ++AEY A ASA + L +L+DL+ + + CDN SA+ I+ NP
Sbjct: 54 S----------SEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANP 103
Query: 1219 VFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTKVIPKERFEDLRQRIGV 1276
VFH TKH++I H +RE Q+ L+ SS++Q+AD FTK + + F L ++G+
Sbjct: 104 VFHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGM 161
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 1003 MEVLQTNDGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSL 1062
ME+L + G + Q Y S+IL +F M DC T + E E VD ++R L
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRL 60
Query: 1063 IGSLLYLTASRPDILLAVSLLSRFMHLPRETHFTAAKRVLRYIKGTSTFGMFFAAI-AGE 1121
IGSL YL SRP I V ++SRFM P +T+F +AK++LRYI T +G+ F + A E
Sbjct: 61 IGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATE 120
Query: 1122 SLKLVGYCDSD 1132
L + GY D+D
Sbjct: 121 QLDMEGYSDAD 131
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 70/105 (66%)
Query: 910 VYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATLYVRNTDDEFLVVSIYVDDML 969
VY+L K+LYGLKQA R WY ++ L++ GF S ++ +L+ + + F+ V IYVDD++
Sbjct: 2 VYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLV 61
Query: 970 VTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFI 1014
+ G+ + I FK +++ F M DLG +KYFLG+E+ + +G F+
Sbjct: 62 IAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 28/140 (20%)
Query: 787 MKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSICKHKARLVVKGYAQQYGV 846
M+AE+ + W+LVD N K IG + ++K K +DGSI ++KARLVVKGY Q G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 847 DYXETFAPVARYDTIKL----------------------------LLTFAAHNSWQIHQL 878
DY +T++PVA+ T +L ++ A+ N W IH+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 879 DVKSAFLNGFLNEEIFVEQP 898
D SAFL+G L E++++ P
Sbjct: 121 DANSAFLHGDLQEDVYMLIP 140
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 50/184 (27%)
Query: 1040 STGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILLAVSLLSRFMHLPRETHFTAAK 1099
+ G KL +D N E ++ +YR +IG L Y+ RP I V L
Sbjct: 21 TAGAKLSEDTNDEPMNATIYRQIIGPLRYMCNKRPYIAHGVGL----------------- 63
Query: 1100 RVLRYIKGTSTFGMFFAAIAGESLKLVGYCDSDWGGCIEDSRSTSGYLFSLGTSFFSWSS 1159
+KG D D D +ST+ YLF +G + SWSS
Sbjct: 64 -----VKG----------------------DQD------DKKSTTCYLFMIGAAPISWSS 90
Query: 1160 KKQETTAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPV 1219
KKQ A S+++A+Y+AT+ A QA+W+ +L++L + + K++ DN A+ ++ P+
Sbjct: 91 KKQGIVALSSSEAKYVATSYAACQALWIEMLLEELNAFEVDRIKLLVDNKLAIDLADRPI 150
Query: 1220 FHGR 1223
HG+
Sbjct: 151 SHGK 154
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 67/117 (57%)
Query: 968 MLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFISQQKYISDILYRF 1027
M+++G I++ K + FEM DL + YFLG+E L +ND F+SQ KY SD++ +
Sbjct: 1 MIISGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQA 60
Query: 1028 KMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILLAVSLLS 1084
+ DCK T + ++ + T D LY +GSL+YLT +RP+I V L+S
Sbjct: 61 GLTDCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236 H
EGN_Mt090430 20090702
Length = 89
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 1191 LKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSS 1250
+K+L CE + K+ DN S ++++KNP+ GR+KHIK +FHFIRE + + +C +
Sbjct: 1 MKELHCEVKKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPT 60
Query: 1251 ENQLADIFTKVIPKERFEDLRQRIGV 1276
E QL D FTK +RF LR ++G+
Sbjct: 61 EVQLGDGFTKAFKIDRFTCLRDKLGL 86
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 57/78 (73%)
Query: 1201 ATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTK 1260
A K+ DN SA++++KN +FHG+ KH++ +FHF+R+ NE+++ +C +++QL D+FTK
Sbjct: 11 AVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTK 70
Query: 1261 VIPKERFEDLRQRIGVCH 1278
+ +++F LR+ I V +
Sbjct: 71 ALKRDQFLKLRREIRVVN 88
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 62/92 (67%)
Query: 1181 VNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQS 1240
V QA+W+ + ++L + + K++ DN S + ++ +P+ HG +KHI+ KFHF+R+
Sbjct: 4 VRQALWIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNK 63
Query: 1241 NEVLLVHCSSENQLADIFTKVIPKERFEDLRQ 1272
++ L +C++E QLA+IFTK + K F++L++
Sbjct: 64 MKLDLEYCNTEVQLANIFTKPLKKAMFDELKK 95
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%)
Query: 1164 TTAQSTAKAEYIATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGR 1223
T ++S+++AEY A A+ V + WL +L+D + + CD+ SA I+ N FH R
Sbjct: 248 TVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHER 307
Query: 1224 TKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTKVIPKERFEDLRQRIGV 1276
TKHI++ H +RE Q L+ SS QLAD+ TK + F + ++G+
Sbjct: 308 TKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGL 360
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%)
Query: 507 LSGNNYFLLFIDDSTRMCWVYFIKLKSEVFDVFKQFKALVENQCNLKIKALRSDNGGEYT 566
+ G YF+LFIDD + W+Y IK + E+ ++ F +++ Q + IK R DN EY
Sbjct: 1 MGGARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYR 60
Query: 567 SRQFAELCKSAGIEHQLTVPYTPQQNRVFERKNRTVIEMARCLLIEKQMP 616
+ G + + PYT QQ ERK+R +++ +LI P
Sbjct: 61 DSKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 89/205 (43%), Gaps = 63/205 (30%)
Query: 965 VDDMLVTGSKLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFISQQKYISDIL 1024
+DD++VTGS I++FK M+ FEMTDLG + YFLG++ ++T+ + Q+K DI
Sbjct: 1 MDDLMVTGSNKAEIEEFKLRMKSEFEMTDLGKLAYFLGIKFMETSRALVMHQEKL--DIC 58
Query: 1025 YRFKMQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILLAVSLLS 1084
+ + GL ASR
Sbjct: 59 F--------------AIGL---------------------------ASR----------- 66
Query: 1085 RFMHLPRETHFTAAKRVLRYIKGTSTFGMFFA-AIAGESLKLVGYCDSDWGGCIEDSRST 1143
FM P +THF AK +LRYIKG +G+ F + E L+L G+ D DW G D
Sbjct: 67 -FMSKPMKTHFLVAKCILRYIKGKIQYGILFPISQMTEKLELEGFLDDDWYG---DEVER 122
Query: 1144 SGYLFSLGTSF----FSWSSKKQET 1164
G +SF F SK+ ET
Sbjct: 123 EGVQVVTCSSFMNPIFHGKSKRIET 147
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 588 TPQQNRVFERKNRTVIEMARCLLIEKQMPNQFXAEAVNTSVYLLNRLPTKALQDKTPYEA 647
TPQ N V ER N+T++E AR +L + F AEAVNT+ YL+NR P ++ KT YE
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 648 WYDHKPTIHHIKIFGCICYYQVSKSK 673
W ++++FGC YY V++ K
Sbjct: 65 WPGKSVDYSNLRVFGCTVYYHVNEWK 90
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%)
Query: 1029 MQDCKPVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTASRPDILLAVSLLSRFMH 1088
M +C P T + T L L ++ E VD +R LIG L YL +RPD+ L++ LLS+FM
Sbjct: 1 MGNCNPTLTQVVTSLSLINEQRKENVDFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQ 60
Query: 1089 LPRETHFTAAKRVLRYIKGTSTFGMFFA 1116
+H A KR+L YIKG + F+
Sbjct: 61 NLGVSHMIAVKRMLIYIKGKVEHAILFS 88
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 1201 ATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTK 1260
A + DNIS ++++KNP+ HGR+KHI+++FH++RE ++ L H SENQ+AD+ TK
Sbjct: 24 AVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 83
Query: 1261 VIPKERFEDLRQRIGV 1276
+ E F R + +
Sbjct: 84 GVKIEVFTKPRDSMEI 99
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 1201 ATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTK 1260
A + DNIS ++++KNP+ HGR+KHI+++FH++RE ++ L H SENQ+AD+ TK
Sbjct: 115 AVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 174
Query: 1261 VIPKERFEDLRQRIGV 1276
+ E F R + +
Sbjct: 175 GVKIEVFTKPRDSMEI 190
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 974 KLELIQKFKNEMEKVFEMTDLGIMKYFLGMEVLQTNDGFFISQQKYISDILYRFKMQDCK 1033
KL I +F+ +M + FEMTDLG + YFLG+E + + + Q++Y IL +F ++
Sbjct: 19 KLAHISEFRKDMMRQFEMTDLGHISYFLGIEFHRRSRDLLMHQRRYAIKILKKFDIEYRN 78
Query: 1034 PVSTPISTGLKLGKDENTEKVDTILYRSLIGSLLYLTAS 1072
TP T +L K+ + VD Y LIGS +++ +
Sbjct: 79 HAVTPAKTIFQLSKNNDESDVDPTQYGRLIGSQVFIAVT 117
>IMGA|Medtr3g097190.1 copia-type polyprotein, putative
chr03_pseudomolecule_IMGAG_V3 23165389-23165052 H
EGN_Mt090430 20090702
Length = 85
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 1120 GESLKLVGYCDSDWGGCIEDSRSTSGYLFSLGTSFFSWSSKKQETTAQSTAKAEYIATAS 1179
GES KL GY DSD G D RSTSG LF + SW +K+Q TA S+ +AEYIA
Sbjct: 9 GES-KLEGYSDSDRCGDRMDRRSTSGCLFKFNDAAISWCTKRQPITALSSCEAEYIAGTF 67
Query: 1180 AVNQAIWLRKMLKDLQCE 1197
A QAIWL ++K+L CE
Sbjct: 68 AACQAIWLDNVIKELNCE 85
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 60/140 (42%), Gaps = 41/140 (29%)
Query: 787 MKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSICKHKARLVVKGYAQQYGV 846
M EL I KN+ +LV + K IGVK V+K K N +G I K
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGKIVKKVP------------- 47
Query: 847 DYXETFAPVARYDTIKLLLTFAAHNSWQIHQLDVKSAFLNGFLNEEIFVEQPDDFLIPRK 906
+ D+K FLNG L E +FV+QP I K
Sbjct: 48 ----------------------------LFHFDMKLYFLNGSLEETMFVKQPSGLEIKCK 79
Query: 907 EDQVYFLNKALYGLKQAPRA 926
E+ VY L+K LYGLKQAPRA
Sbjct: 80 EENVYKLHKDLYGLKQAPRA 99
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 49/77 (63%)
Query: 895 VEQPDDFLIPRKEDQVYFLNKALYGLKQAPRAWYERMDNYLMQLGFSRSQSEATLYVRNT 954
+ QP F+ P+ +QV L K+LYGLKQAP+AW++ + +L+ F ++S+ +L++
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 955 DDEFLVVSIYVDDMLVT 971
+ F +YVDD+ +T
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
20905948-20906136 H EGN_Mt090430 20090702
Length = 62
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 1221 HGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTKVIPKERFEDLRQRIGVCHRN 1280
HGR KHI ++FHF R++ Q + L HC+S++QL DI TK + E F LR ++GV R+
Sbjct: 2 HGRCKHINVRFHFFRDLPQDGVMELKHCNSQDQLVDIMTKPLKLETFCKLRAKLGVLDRS 61
>IMGA|Medtr3g169320.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 44131380-44131084 H
EGN_Mt090430 20090702
Length = 98
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 530 KLKSEVFDVFKQFKALVENQCNLKIKALRSDNGGEYTSRQFAELCKSAGIEHQLTVPYTP 589
K KSEV + F +ENQ N K+K +R+DNG E+ F S GIEHQ + TP
Sbjct: 4 KTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMPDFYS---SKGIEHQTSCVETP 60
Query: 590 QQNRVFERKNRTVIEMARCLLIEKQ 614
QQN ERK++ ++ +AR +L + +
Sbjct: 61 QQNGRVERKHQHILNVARAMLFQSK 85
>IMGA|Medtr8g081950.1 lectin receptor kinase, related
chr08_pseudomolecule_IMGAG_V3 16974207-16974491 H
EGN_Mt090430 20090702
Length = 94
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 935 LMQLGFSRSQSEATLYV-RNTDDEFLVVSIYVDDMLVTGSKLELIQKFKNEMEKVFEMTD 993
++Q ++ SE +YV ++ +++ +YV+D L+T S I +FKN++ K FEM D
Sbjct: 1 MLQALCNKCDSEHGMYVIKDKSKGVIILYLYVNDFLITCSNGSYINEFKNDLMKEFEMVD 60
Query: 994 LGIMKYFLGMEVLQTNDGFFISQQKYISDILYRF 1027
LG + YFL ME +T+ S++ Y S+IL RF
Sbjct: 61 LGHISYFLRMEFQRTSRASNSSKEIYASEILKRF 94
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 1176 ATASAVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIR 1235
A A A ++ W+ L D + I CDN S++ I NPVFH RTKHI+I H +R
Sbjct: 3 ALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVVR 62
Query: 1236 E 1236
+
Sbjct: 63 D 63
>IMGA|Medtr5g028800.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
11924241-11920624 H EGN_Mt090430 20090702
Length = 92
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 991 MTDLGIMKYFLGMEVLQTNDGFFISQQKYISDILYRFKMQDCKPVSTPISTGLKLGKDEN 1050
M+DLG + YFL ME + T G + Q+KY IL +F M + + + TG L KD N
Sbjct: 1 MSDLGNLSYFLRMEFVNTEKGVILHQKKYAKYILKKFGMSNDNLAISRLETG-DLSKDTN 59
Query: 1051 TEKVDTILYRSL-IGSLLYLTA 1071
E + ++ + IGSL Y+ A
Sbjct: 60 DELTNATTHKQINIGSLRYMCA 81
>IMGA|AC235488_16.1 Polynucleotidyl transferase, Ribonuclease H fold,
putative AC235488.1 64684-64944 H EGN_Mt090430 20090702
Length = 86
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 1180 AVNQAIWLRKMLKDLQCEQTEATKIMCDNISAVSISKNPVFHGRTKHIKIKFHFIR 1235
A QA WL M++ L ++ E +++ D+ S + ++K+ V HGR+KHI+ +FH++R
Sbjct: 2 AACQAQWLSMMMQYLNLKEDEKMRLLLDSKSTIDLAKHLVAHGRSKHIETRFHYLR 57
>IMGA|Medtr7g046200.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr07_pseudomolecule_IMGAG_V3
11303402-11302786 H EGN_Mt090430 20090702
Length = 126
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 1203 KIMCDNISAVSISKNPVFHGRTKHIKIKFHFIREVQQSNEVLLVHCSSENQLADIFTKVI 1262
K++ DN S + + +P+ H R+K+I+ K +F R + + HC++E Q ADIF K
Sbjct: 31 KLLVDNNSTIDLHNHPMSHRRSKNIERKLNFQRNQVNKKKPEMEHCNTEMQHADIFAKPS 90
Query: 1263 PKERFEDLRQ 1272
K RF++L++
Sbjct: 91 KKARFDELKE 100
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%)
Query: 787 MKAELEMINKNEIWQLVDRRANRKVIGVKRVFKTKFNSDGSICKHKARLVVKGYAQQYGV 846
M +L I W L ++ VIG K ++ K +G+I + K L+VK Y +Q GV
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 847 DYXETFAPVARYDTIKLLLTFAAHNSWQIHQLD 879
+ +TF+ VA+ + LLL+ + QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93