Jatropha Genome Database

JcCB0011561.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011561.40 + phase: 0 
         (132 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g043640.1 Complex 1 LYR protein chr08_pseudomolecule_...   201   8e-53

>IMGA|Medtr8g043640.1 Complex 1 LYR protein
           chr08_pseudomolecule_IMGAG_V3 9485756-9481596 F
           EGN_Mt090430 20090702
          Length = 133

 Score =  201 bits (511), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 116/132 (87%), Gaps = 1/132 (0%)

Query: 1   MAFTLRSLKVPPNSASLEEARARVFDFFRTACRSIPTIMDIYNLQDVVTVSELRSSIASQ 60
           MA  +R+ KVPPNS +L EAR RVF+FFR+ACRS+PT+M++YNL DV TVS+LRS+IA++
Sbjct: 1   MAQAIRNAKVPPNSVNLSEARQRVFEFFRSACRSLPTVMEVYNLYDVATVSQLRSTIAAE 60

Query: 61  IRKNSNVTNPKVIDMLLFKGMEELNNIVEHAKQRHHIIGQYVVGQHGL-VQDLDSKDQGM 119
           IRKN ++TNPKVIDMLLFKG+EEL N+V H+KQRHHI+GQYVVG+ GL  Q+L +K+QG+
Sbjct: 61  IRKNDHITNPKVIDMLLFKGLEELKNVVNHSKQRHHIVGQYVVGRRGLEQQELAAKEQGI 120

Query: 120 SDFLKNFYKSNY 131
           S+FLKNFY +NY
Sbjct: 121 SNFLKNFYDTNY 132