Jatropha Genome Database

JcCB0011311.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011311.10 + phase: 0 /pseudo/partial
         (475 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g159510.1 Adaptin, N-terminal; AP2 clathrin adaptor, ...   806   0.0  
IMGA|Medtr4g095440.1 Adaptin, N-terminal; AP2 clathrin adaptor, ...   784   0.0  

>IMGA|Medtr3g159510.1 Adaptin, N-terminal; AP2 clathrin adaptor,
           alpha and beta chain, appendage; ; ;
           chr03_pseudomolecule_IMGAG_V3 41757228-41747971 E
           EGN_Mt090430 20090702
          Length = 887

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/454 (84%), Positives = 415/454 (91%)

Query: 22  PEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR 81
           P+AKE+GLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIR+IYNRVHLENATVR
Sbjct: 434 PDAKETGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRFIYNRVHLENATVR 493

Query: 82  AAAVSTLAQFGALVDTLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGEVVETDKDV 141
           A AVSTLA+FGA VD LKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDG VVETDK V
Sbjct: 494 AGAVSTLAKFGAAVDELKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKAV 553

Query: 142 QAFLFGPLDIPLFNLETSLKNYEPSEEPFDIHSVPKEVKSQPLAEKKAPGKKPTGLGSPP 201
           + FLFGP DIPL NLET LKNYEPSEE FDI SVPKEVKSQPLAEKKA GKKPTGLG+PP
Sbjct: 554 KDFLFGPFDIPLVNLETGLKNYEPSEEAFDIDSVPKEVKSQPLAEKKASGKKPTGLGAPP 613

Query: 202 AGPPSTVDAYEKLISSIPEFSNFGKLFKSSAPVELTEAETEYAVNAVKHIFDGHVVFQYN 261
           +GPPST DAY++ +SSIPEF+NFG LFKSSAPVELTEAETEYAVN VKHIFD HVVFQYN
Sbjct: 614 SGPPSTADAYQRALSSIPEFANFGNLFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYN 673

Query: 262 CTNTIPEQLLENVMVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGKF 321
           CTNTIPEQLLE+V+VIVD            KPL+SLPYDSPGQ FVAFEKPEGVP +GKF
Sbjct: 674 CTNTIPEQLLEHVIVIVDNSEADEFSEAFSKPLKSLPYDSPGQIFVAFEKPEGVPTLGKF 733

Query: 322 SNMLRFIVKEVDPTTGEADEDGVEDEYQLEELEVVAADYMMKVGVSNFRNAWESMGPDCE 381
           SN+L+FIV+EVDPTTGEA++DGVEDEYQLE+LE+V+ADY +KVGVSNFRNAWESMGPD E
Sbjct: 734 SNVLKFIVREVDPTTGEAEDDGVEDEYQLEDLEIVSADYTLKVGVSNFRNAWESMGPDFE 793

Query: 382 RVDEYGLGPRESLSEAVSAVINLLGMQPCEGTEVVASNSRSHTCLLSGVFIGNVRVLVRL 441
           RVDEYGLGPRESL+EAV+ VINLLG+QPCEGTEVV  NSRSHTCLLSGVFIGN++VLVRL
Sbjct: 794 RVDEYGLGPRESLAEAVNTVINLLGLQPCEGTEVVPPNSRSHTCLLSGVFIGNIKVLVRL 853

Query: 442 QFGIDGARDVAMKLAVRSEDESVSDAIHEIVASG 475
            FG+DG +DVAMKL VRSEDE+VSDAIHEIVASG
Sbjct: 854 SFGLDGPKDVAMKLTVRSEDETVSDAIHEIVASG 887


>IMGA|Medtr4g095440.1 Adaptin, N-terminal; AP2 clathrin adaptor,
           alpha and beta chain, appendage; ; ;
           chr04_pseudomolecule_IMGAG_V3 19859254-19866796 E
           EGN_Mt090430 20090702
          Length = 885

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/455 (83%), Positives = 409/455 (89%), Gaps = 4/455 (0%)

Query: 22  PEAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVR 81
           P+AKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKT DPSKYIRYIYNRVHLENATVR
Sbjct: 434 PDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTLDPSKYIRYIYNRVHLENATVR 493

Query: 82  AAAVSTLAQFGALVDTLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGEVVETDKDV 141
           A+AVSTLA+FGA VD LKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGD E+   D D 
Sbjct: 494 ASAVSTLAKFGASVDGLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDTEI---DNDA 550

Query: 142 QAFLFGPLDIPLFNLETSLKNYEPSEEPFDIHSVPKEVKSQPLAEKKAPGKKPTG-LGSP 200
           + FLFG LDIPL NLETSLK YEPSEE FDI+ VPKEVKSQPLAEKKAPGKKPTG LG+P
Sbjct: 551 KDFLFGSLDIPLVNLETSLKKYEPSEEAFDINLVPKEVKSQPLAEKKAPGKKPTGGLGAP 610

Query: 201 PAGPPSTVDAYEKLISSIPEFSNFGKLFKSSAPVELTEAETEYAVNAVKHIFDGHVVFQY 260
           P+GPPSTVD+YEK + SIPEF+NFGK FKSSAPVELTEAETEYAVN VKHIFD HVVFQY
Sbjct: 611 PSGPPSTVDSYEKQLLSIPEFANFGKPFKSSAPVELTEAETEYAVNVVKHIFDTHVVFQY 670

Query: 261 NCTNTIPEQLLENVMVIVDXXXXXXXXXXXXKPLRSLPYDSPGQTFVAFEKPEGVPAVGK 320
           NCTNTIPEQLLE+V+V+VD            KPLRSLPYDSPGQ FVAFEKPEG+P  GK
Sbjct: 671 NCTNTIPEQLLEDVIVVVDASEAEEFSQVISKPLRSLPYDSPGQIFVAFEKPEGLPTSGK 730

Query: 321 FSNMLRFIVKEVDPTTGEADEDGVEDEYQLEELEVVAADYMMKVGVSNFRNAWESMGPDC 380
           FSN+LRFIVKEVDPT+GEA++DGVEDEYQLE+LEVVAADY++KVGVSNFRNAWESM PD 
Sbjct: 731 FSNILRFIVKEVDPTSGEAEDDGVEDEYQLEDLEVVAADYILKVGVSNFRNAWESMDPDS 790

Query: 381 ERVDEYGLGPRESLSEAVSAVINLLGMQPCEGTEVVASNSRSHTCLLSGVFIGNVRVLVR 440
           ERVDEYGLGPRE LSEAV+ VI LLGMQPCEGTEVV  NSRSHTCLLSGVFIG V+VLVR
Sbjct: 791 ERVDEYGLGPREGLSEAVNTVITLLGMQPCEGTEVVPPNSRSHTCLLSGVFIGGVKVLVR 850

Query: 441 LQFGIDGARDVAMKLAVRSEDESVSDAIHEIVASG 475
           L FG+DGA+DVAMKLAVRS+D +VSDAIHEIVASG
Sbjct: 851 LSFGLDGAKDVAMKLAVRSDDVTVSDAIHEIVASG 885