Jatropha Genome Database

JcCB0011301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011301.20 + phase: 0 
         (108 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g103250.1 Helix-hairpin-helix motif, class 2 chr01_ps...   162   5e-41
IMGA|Medtr1g103250.3 DNA repair protein (XPGC)/yeast Rad chr01_p...   159   3e-40
IMGA|Medtr1g103250.2 Helix-hairpin-helix motif, class 2 chr01_ps...   157   1e-39

>IMGA|Medtr1g103250.1 Helix-hairpin-helix motif, class 2
           chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E
           EGN_Mt090430 20090702
          Length = 391

 Score =  162 bits (409), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/84 (86%), Positives = 80/84 (95%)

Query: 1   MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLE 60
           MKE KFESYFGRKIA+DASMSIYQFLIVVGR+G+EMLTNEAGEVTSHLQGMF RTIRLLE
Sbjct: 18  MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 77

Query: 61  SGMKPVYVFDGQPPDLKKQELAKR 84
           +GMKPVYVFDG+PP++K QEL KR
Sbjct: 78  AGMKPVYVFDGKPPEMKNQELKKR 101


>IMGA|Medtr1g103250.3 DNA repair protein (XPGC)/yeast Rad
           chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E
           EGN_Mt090430 20090702
          Length = 179

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 80/84 (95%)

Query: 1   MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLE 60
           MKE KFESYFGRKIA+DASMSIYQFLIVVGR+G+EMLTNEAGEVTSHLQGMF RTIRLLE
Sbjct: 18  MKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 77

Query: 61  SGMKPVYVFDGQPPDLKKQELAKR 84
           +GMKPVYVFDG+PP++K QEL KR
Sbjct: 78  AGMKPVYVFDGKPPEMKNQELKKR 101


>IMGA|Medtr1g103250.2 Helix-hairpin-helix motif, class 2
          chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E
          EGN_Mt090430 20090702
          Length = 376

 Score =  157 bits (397), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 80/84 (95%)

Query: 1  MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLE 60
          +KE KFESYFGRKIA+DASMSIYQFLIVVGR+G+EMLTNEAGEVTSHLQGMF RTIRLLE
Sbjct: 3  IKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFARTIRLLE 62

Query: 61 SGMKPVYVFDGQPPDLKKQELAKR 84
          +GMKPVYVFDG+PP++K QEL KR
Sbjct: 63 AGMKPVYVFDGKPPEMKNQELKKR 86