Jatropha Genome Database

JcCB0011271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011271.10 - phase: 0 
         (506 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g087830.1 ELM2; AT-rich interaction region chr07_pseu...   120   1e-27
IMGA|Medtr8g031750.1 ELM2; AT-rich interaction region; Homeodoma...    90   3e-18

>IMGA|Medtr7g087830.1 ELM2; AT-rich interaction region
           chr07_pseudomolecule_IMGAG_V3 18924751-18920624 E
           EGN_Mt090430 20090702
          Length = 600

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 28/201 (13%)

Query: 137 LLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTC 196
           +L  PP   IP+G NHQA++PEW                           K +++ +GT 
Sbjct: 378 ILDAPPTVNIPLGPNHQAEVPEWTG----------------------TTHKSDSKWLGTQ 415

Query: 197 VIPM----PEFGLAAKVGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLG 251
           + P+     +      VG  R D C C  +GS+ CV+ HI E    LK  +G   F Q  
Sbjct: 416 IWPLQIVKSKLLEGEPVGKGRQDSCRCQVQGSVECVRFHIAEKSAKLKLEIGVA-FYQWN 474

Query: 252 FCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFM 311
             + GE+V   W+  EE+ F++VV SNPASL + FW+ + + FP +S++ ++SYYFNVF+
Sbjct: 475 LDKAGEEVRRCWTAEEEKKFKDVVKSNPASLDRCFWDDIFTTFPKKSRESLVSYYFNVFL 534

Query: 312 LRRRAEQNRCNSMNVDDSDND 332
           L+RR  QNR    N+D  D +
Sbjct: 535 LQRRGYQNRHTPDNIDSDDEE 555


>IMGA|Medtr8g031750.1 ELM2; AT-rich interaction region;
           Homeodomain-like chr08_pseudomolecule_IMGAG_V3
           6837098-6834026 E EGN_Mt090430 20090702
          Length = 593

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 26/198 (13%)

Query: 146 IPIGSNHQADIPEW---NPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMPE 202
           I +G  +QA +PEW   NP                 ++  L+ER                
Sbjct: 408 ICVGQKYQAQVPEWTGPNPESDTKWFGTQVWPLAVANSQFLVERD--------------- 452

Query: 203 FGLAAKVGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMGEQVAE 261
                 +G  R D C C  +GS+ CV+ HI E +   K  LG   F    F ++GE V  
Sbjct: 453 -----PIGRGRQDSCGCAVQGSVECVRFHISEKKAKAKLELGVA-FYHWRFDKVGEDVRN 506

Query: 262 KWSEGEEQLFREVVFSNPASLG-KNFWELLSSVFPSRSKKDIISYYFNVFMLRRRAEQNR 320
            W++ +E+ F EV+   P   G ++FW+ +   FP++S++ ++SYYFNV++L+R+A   R
Sbjct: 507 SWTDEDEKRFWEVLQLYPPKRGSEHFWDHIFETFPNKSRETLVSYYFNVYLLQRKAYHTR 566

Query: 321 CNSMNVDDSDNDEWQESD 338
               N+D   +D+  ESD
Sbjct: 567 HTLGNIDIQSDDDESESD 584