Jatropha Genome Database

JcCB0009671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009671.20 - phase: 0 
         (366 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g106780.1 Homoserine kinase; chr05_pseudomolecule_IMG...   478   e-135

>IMGA|Medtr5g106780.1 Homoserine kinase;
           chr05_pseudomolecule_IMGAG_V3 43022538-43025033 E
           EGN_Mt090430 20090702
          Length = 431

 Score =  478 bits (1229), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/371 (67%), Positives = 289/371 (77%), Gaps = 9/371 (2%)

Query: 2   AICFLSPSKPVTFSPSLQNKR---PPPLLRC-----NFALPTIATTEPEPVYTSVRSFAP 53
           + CF   S P+ F+   +N +       +RC       +     TT+P PVY+SV++FAP
Sbjct: 4   STCFFQSSSPLPFNFKQKNNQIHISIFRIRCYNTSQKHSSVVTLTTDPPPVYSSVKAFAP 63

Query: 54  ATVANLGPGFDFLGCAVDGLGDFVAVRIDPSVHPGEISISDITG-THASKKLSKNPLWNC 112
           ATVANLGPGFDFLGCAVDG+GD V++++DP VHPGEISIS I+G T    KLSKNPLWNC
Sbjct: 64  ATVANLGPGFDFLGCAVDGIGDTVSLKVDPDVHPGEISISHISGQTPNIHKLSKNPLWNC 123

Query: 113 ATIAAIAAMKMLNIRSVGLSLTLEKGLPLGSGLGXXXXXXXXXXXXXNEIFGGKLQVKDL 172
           A IAAI AMKML IRSVGLSL+LEKGLPLGSGLG             NEIFG +L V DL
Sbjct: 124 AGIAAIEAMKMLRIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNEIFGKRLSVDDL 183

Query: 173 VRAGLESEAKVSGYHADNIAPAIMGGFVLIRNYNPLELMSLNFPEEKEIFFVLVSPDFEA 232
           V A L+SE KVSGYHADN+AP+IMGGFVLIRNY PLELM L FP EK+++FVLV+P+FEA
Sbjct: 184 VLACLKSEEKVSGYHADNVAPSIMGGFVLIRNYQPLELMPLKFPSEKDLYFVLVTPEFEA 243

Query: 233 PTKKMRAALPAEVGIPHHVWNCSQAGALVASVLQGDLVGLGKALSNDKIVEPKRAPLIPG 292
           PTKKMRAALP E+G+PHHVWN SQA ALVASVLQGDL  LGKALS+DKIVEPKRAPLIPG
Sbjct: 244 PTKKMRAALPLEIGMPHHVWNSSQAAALVASVLQGDLFMLGKALSSDKIVEPKRAPLIPG 303

Query: 293 MEEVKKAAISAGAFGCTISGAGPTAVAVIDDEERGKEIGEKMVEAFLKEGNLKAVAMVKR 352
           M+ VKKAAI AGAFGCTISGAGPTAVAV D+EE+G  I + MV AF KEGNL A A VK+
Sbjct: 304 MDAVKKAAIQAGAFGCTISGAGPTAVAVTDNEEKGHIIAQHMVLAFQKEGNLNASANVKQ 363

Query: 353 LDRVGARLVGS 363
           LDR+GARL+ S
Sbjct: 364 LDRLGARLISS 374