Jatropha Genome Database

JcCB0009521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009521.10 - phase: 1 /pseudo/partial
         (167 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g110800.1 binding, related chr07_pseudomolecule_IMGAG...    94   4e-20

>IMGA|Medtr7g110800.1 binding, related chr07_pseudomolecule_IMGAG_V3
           25861480-25862309 E EGN_Mt090430 20090702
          Length = 196

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 23/108 (21%)

Query: 59  HKFVKDAVERDHKLDDILIPIIQHVLLISKFPFCTLLIFDVKSSINFSLRSKDLKHGGQA 118
           H +V DAV  +   D +L+PII                         SL+ KD KH GQA
Sbjct: 72  HTYVTDAVNHNRSFDQLLLPIIHS-----------------------SLKCKDSKHSGQA 108

Query: 119 LILINWLFQDEFFFQAVVRSLADIIDRKDDRYIALGWCILIRGLVEYE 166
           +IL+NWLFQDE  F  V  +LA II R  DRY++ GWC+L+R +V+YE
Sbjct: 109 IILLNWLFQDELLFIPVAEALASIITRNHDRYLSFGWCLLLRSIVDYE 156