Jatropha Genome Database
- JcCB0009491.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0009491.30 + phase: 1 /TE
(254 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 106 1e-23
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 101 4e-22
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 98 4e-21
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 93 1e-19
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 90 1e-18
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 76 1e-14
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 66 2e-11
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 65 4e-11
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 56 2e-08
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 56 2e-08
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 54 5e-08
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 53 2e-07
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 51 6e-07
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 49 2e-06
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 49 2e-06
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Query: 77 ISIMSQRISFNC---CKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTY 133
++IM I+++ R+LRYL + G+ K + L + D D+A + R+ST
Sbjct: 111 LTIMHPEITYSVHILTMRVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTS 170
Query: 134 GTCQFRGSALVLWFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI- 192
G GSA + W +KKQ+ V+ S++EAEY V+ V+W++ L+ + + +
Sbjct: 171 GYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVL 230
Query: 193 KCGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
C N +A++L+ NPV H RTKHIE+ FIR H+Q+G I ++P +KQ
Sbjct: 231 LCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQ 279
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 87 NCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLW 146
N R LRYL GL++ + + L SD D+AG RKS G C F G++L+ W
Sbjct: 1063 NAALRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISW 1122
Query: 147 FSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI-KCGNISAINLSKN 205
+KKQT V+ S++EAEY S + W+ L D + P+ C N SA++++ N
Sbjct: 1123 RTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAAN 1182
Query: 206 PVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
PV H RTKH+E+ +R+ +Q G V++ +P+ Q
Sbjct: 1183 PVFHERTKHLEIDCHIVREKLQAG--VLKLLPVSSQ 1216
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 91 RILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSKK 150
R+L+YL GL++ + + +L SD D+AG R+S G C F G++L+ W +KK
Sbjct: 1221 RVLKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKK 1280
Query: 151 QTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI-KCGNISAINLSKNPVQH 209
Q V+ S++EAEY S + WI L D +P+ C N SAI+++ NPV H
Sbjct: 1281 QITVSKSSSEAEYRALASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFH 1340
Query: 210 SRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
RTKH+E+ IRD +Q G V++ + + Q
Sbjct: 1341 ERTKHLEIDCHLIRDKLQSG--VLKLLTVSSQ 1370
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 91 RILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSKK 150
R+LRYL GL++ + L +SD D+AG R+S G C F G++L+ W +KK
Sbjct: 1195 RVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKK 1254
Query: 151 QTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPIK-CGNISAINLSKNPVQH 209
Q V+ S++EAEY S + W+ L D + +P+ C N SA++++ NPV H
Sbjct: 1255 QVTVSRSSSEAEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFH 1314
Query: 210 SRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
RTKH+E+ +R+ + G +++ +P+ +
Sbjct: 1315 ERTKHLEIDCHIVREKLHSG--ILKLLPVSSK 1344
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 88 CCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWF 147
RILRYL ++ GL++ + + L+ +SD D+AG R+S G C F G +L+ W
Sbjct: 1209 AATRILRYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWK 1268
Query: 148 SKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADY---GLKLEIVPIKCGNISAINLSK 204
+KKQ V+ S++EAEY + + W+ L D +KL + + C N SA++++
Sbjct: 1269 TKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHDLHVTTVKLHV--LYCDNQSALHIAA 1326
Query: 205 NPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPI 238
NPV H RTKH+E+ +R+ +Q +++ +P+
Sbjct: 1327 NPVFHERTKHLEIDCHLVREKLQA--CIMKLLPV 1358
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 83 RISFNCCKRILRYLCETFNLGLWYSKG---DTFDLARHSDYDFAGSGIDRKSTYGTCQFR 139
+ F K+I+RY+ T G+ + + + + +SD D+ DR+ T
Sbjct: 408 KTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFML 467
Query: 140 GSALVLWFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPIK--CGNI 197
A + W SKKQ VALS+ E EY+ S W+Q L +KL+ PIK N
Sbjct: 468 QGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLK-QPIKLLIDNK 526
Query: 198 SAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVI 233
AINL+KN + H ++KHIE K ++RD V K I I
Sbjct: 527 YAINLAKNHISHGKSKHIETKFHYLRDQVNKCKINI 562
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%)
Query: 87 NCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLW 146
N R+L+YL GL++ + + L SD D+AG R+S G C F G++L+ W
Sbjct: 148 NAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNSLISW 207
Query: 147 FSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI 192
+KKQT V+ S++EAEY S + WI L D ++ +P+
Sbjct: 208 RTKKQTTVSRSSSEAEYRALASATCELQWILYLLKDLNIQSSKLPV 253
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 35/156 (22%)
Query: 86 FNCCKRILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVL 145
+N R+LRYL GL + + + +SD D+AG R+S G C F G +L+
Sbjct: 557 YNAALRVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLIS 616
Query: 146 WFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPIKCGNISAINLSKN 205
W +KKQ V+ S++EAEY R+ A + N
Sbjct: 617 WRTKKQLTVSRSSSEAEY---RALGA------------------------------ATSN 643
Query: 206 PVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
PV H RTKH+E+ +R+ + G +++ +PI +
Sbjct: 644 PVFHERTKHLEIDCHIVREKLAAG--IMKLLPISSK 677
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 190 VPIKCGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
V +K NIS INL+KNP+ H R+KHIE++ ++R+ V KG + +E E Q
Sbjct: 116 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQ 167
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 190 VPIKCGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQF 242
V +K NIS INL+KNP+ H R+KHIE++ ++R+ V KG + +E E Q
Sbjct: 25 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQI 77
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 190 VPIKCGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQF 242
V +K N SAINL+KN + H + KH+E + F+RD V K ++++E+ P + Q
Sbjct: 12 VKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQL 64
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 124 GSGIDRKSTYGTCQFRGSALVLWFSKKQTFVALSTAEAEYITTRSCVAPVLWIQQKLADY 183
G D+KST G+A + W SKKQ VALS++EA+Y+ T LWI+ L +
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 184 -GLKLEIVPIKCGNISAINLSKNPVQHSR 211
+++ + + N AI+L+ P+ H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 92 ILRYLCETFNLGLWYSKGDTFDLA--RHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSK 149
+LR+L T + GL T+ L+ + D D+ DR + C F G L+ W++K
Sbjct: 119 VLRHLKGTLSWGLLVRPIPTYPLSILAYCDADWGSDPDDR--SVDACVFLGPNLISWWAK 176
Query: 150 KQTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIV 190
KQ +A S+ EAEY + + +LWI+ YG +L+++
Sbjct: 177 KQAVIARSSTEAEYSSLALAKSELLWIKT----YGARLKVI 213
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 91 RILRYLCETFNLGLWYSKGDTFDLARHSDYDFAGSGIDRKSTYGTCQFRGSALVLWFSKK 150
R+L YL GL++ + + + +++ D+A D + + +
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSIS---------------E 46
Query: 151 QTFVALSTAEAEYITTRSCVAPVLWIQQKLADYGLKLEIVPI-KCGNISAINLSKNPVQH 209
Q F S++EAEY S + + L D + P+ C N SAI ++ NPV H
Sbjct: 47 QCFFCWSSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFH 106
Query: 210 SRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQ 241
TKH+E+ +R+ +Q G + + +PI +
Sbjct: 107 ECTKHLEIDCHIVREKLQAG--LFKLLPISSK 136
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 192 IKCGNISAINLSKNPVQHSRTKHIELKHQFIRDHVQKGDIVIEFIPIEKQF 242
+K N S INL+KNP+ R+KHI+ + FIR+ V K I +E+ P E Q
Sbjct: 14 LKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPTEVQL 64