Jatropha Genome Database
- JcCB0009491.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0009491.20 - phase: 1 /TE
(219 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 79 1e-15
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 75 3e-14
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 73 1e-13
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 68 3e-12
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 66 2e-11
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 65 3e-11
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 64 6e-11
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 63 1e-10
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 56 2e-08
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 52 2e-07
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 52 2e-07
IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H... 52 2e-07
IMGA|Medtr7g046200.1 Polynucleotidyl transferase, Ribonuclease H... 50 6e-07
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 50 8e-07
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 50 1e-06
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%)
Query: 102 STVEA*YFAASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHI 161
S+ EA Y A V++ IWLR +L L+ + T +L DN+A + + NPV+ +TKHI
Sbjct: 194 SSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVLLCDNQAAMHLAANPVYHERTKHI 253
Query: 162 KIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGVH 211
++ H IR +E + + ++ Q DIFTKAL +F+ L LGVH
Sbjct: 254 EVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKALGAKQFQELTFKLGVH 303
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 2 VTGSLLYLSISWPDFIFALIILSRFVDAPSETHL*QQREF*GTYKAHL-IMAYSIENPQQ 60
+ G LLYL+ + PD F LS+F+ P++ H + A L ++ Y P +
Sbjct: 1183 LVGRLLYLNNTRPDITFITQQLSQFLSQPTQAH----------HSAALRVLKYLKSCPGK 1232
Query: 61 S---------N*WDFKIAIRLTLLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA* 107
N F A + T R+ F L L KK S+ EA
Sbjct: 1233 GLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAE 1292
Query: 108 YFAASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHA 167
Y A + + W+ +L L K + DN++ I + NNPVF +TKH++I H
Sbjct: 1293 YRALASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHL 1352
Query: 168 IREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGVHSI 213
IR+ + + + SS+DQ D FTKAL F L S LG+ +I
Sbjct: 1353 IRDKLQSGVLKLLTVSSQDQVADFFTKALLPKPFNILLSKLGLINI 1398
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 61/95 (64%)
Query: 125 LVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVVIKHCSS 184
++ LK E A ++ DNK+ I + N +F GK KH++ ++H +R+ + E+++++C +
Sbjct: 1 MIELKIGDEVAVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPT 60
Query: 185 EDQATDIFTKALQKPRFEFLRSLLGVHSITCLKEE 219
+DQ TD+FTKAL++ +F LR + V + L +E
Sbjct: 61 QDQLTDLFTKALKRDQFLKLRREIRVVNFDSLNKE 95
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 91/217 (41%), Gaps = 12/217 (5%)
Query: 2 VTGSLLYLSISWPDFIFALIILSRFVDAPSETH----L*QQREF*GTYKAHLIMAYSIEN 57
+ G LLYL+ + PD F LS+F+ P+ H L R L +
Sbjct: 1029 LVGRLLYLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSL 1088
Query: 58 PQQSN*WDFKIAIRLTLLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA*YFAASV 113
Q F A L T ++ F L L KK S+ EA Y A +
Sbjct: 1089 TLQG----FSDADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALAS 1144
Query: 114 TVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEK 173
+ WL +L L K + DN++ + + NPVF +TKH++I H +RE +
Sbjct: 1145 ATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQ 1204
Query: 174 EKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGV 210
+ + SS+DQ D FTKAL F L S LG+
Sbjct: 1205 AGVLKLLPVSSQDQIADFFTKALLPKTFSLLLSKLGL 1241
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 63/102 (61%)
Query: 115 VNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKE 174
V QA+W+ + L + ++L DNK+ I + ++P+ G +KHI+ K+H +R+ +
Sbjct: 4 VRQALWIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNK 63
Query: 175 KEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGVHSITCL 216
++ +++C++E Q +IFTK L+K F+ L+ L+ + +T +
Sbjct: 64 MKLDLEYCNTEVQLANIFTKPLKKAMFDELKKLMVMKRLTSM 105
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 24/213 (11%)
Query: 4 GSLLYLSISWPDFIFALIILSRFVDAPSETHL*QQREF*GTYKAHL-IMAYSIENPQQSN 62
G LLYL+ + PD + LS+F+ AP+ TH + A L ++ Y P +
Sbjct: 1159 GRLLYLNTTRPDITYITQQLSQFLSAPTHTH----------HSAALRVLRYLKNCPGKGL 1208
Query: 63 *WDFKIAIRL---------TLLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA*YF 109
+ ++L L T R+ F L L KK S+ EA Y
Sbjct: 1209 FFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYR 1268
Query: 110 AASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIR 169
A + + WL +L L K + DN++ + + NPVF +TKH++I H +R
Sbjct: 1269 ALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVR 1328
Query: 170 EAEKEKEVVIKHCSSEDQATDIFTKALQKPRFE 202
E + + SS++Q D FTK+L F
Sbjct: 1329 EKLHSGILKLLPVSSKEQVADFFTKSLHPQPFN 1361
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 22/223 (9%)
Query: 4 GSLLYLSISWPDFIFALIILSRFVDAPSETHL*QQREF*GTYKAHLIMAYSIENPQQSN* 63
G L+YL+ + P FA LS+F+++P+E H A I+ Y ++P Q
Sbjct: 1176 GRLIYLTNTRPYITFATQQLSQFLNSPTEKHY---------IAATRILRYLKKSPGQGLF 1226
Query: 64 WDFKIAIRLT---------LLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA*YFA 110
+ ++ L+ L + R+ F L L + KK S+ EA Y A
Sbjct: 1227 FPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRA 1286
Query: 111 ASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIRE 170
+ WL +L L K + DN++ + + NPVF +TKH++I H +RE
Sbjct: 1287 LGAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVRE 1346
Query: 171 AEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGVHSI 213
+ + + +S DQ D FTK L F L LG+ +I
Sbjct: 1347 KLQACIMKLLPVTSADQLADFFTKPLLPQPFHTLLFKLGMLNI 1389
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 133 EKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVVIKHCSSEDQATDIF 192
+K ++ DN++ I + NP+ +G++KHIK ++H IRE ++ + +++C +E Q D F
Sbjct: 9 KKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPTEVQLGDGF 68
Query: 193 TKALQKPRFEFLRSLLGV 210
TKA + RF LR LG+
Sbjct: 69 TKAFKIDRFTCLRDKLGL 86
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 102 STVEA*YFAASVTVNQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHI 161
S+ EA Y A + + L +L LK K + DN++ I + NPVF TKH+
Sbjct: 53 SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFHECTKHL 112
Query: 162 KIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGV----HSITC 215
+I H +RE + + SS+DQ D FTK+L F L S LG+ H TC
Sbjct: 113 EIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLDIYHPRTC 170
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 46/76 (60%)
Query: 141 DNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPR 200
DN + I + NP+ G++KHI++++H +RE + ++ ++H SE+Q D+ TK ++
Sbjct: 121 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGVKIEV 180
Query: 201 FEFLRSLLGVHSITCL 216
F R + + ++T +
Sbjct: 181 FTKPRDSMEIEALTKM 196
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 135 ATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVVIKHCSSEDQATDIFTK 194
A + DN + I + NP+ G++KHI++++H +RE + ++ ++H SE+Q D+ TK
Sbjct: 24 AVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTK 83
Query: 195 ALQKPRFEFLRSLLGVHSITCL 216
++ F R + + ++T +
Sbjct: 84 GVKIEVFTKPRDSMEIEALTKM 105
>IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
20905948-20906136 H EGN_Mt090430 20090702
Length = 62
Score = 52.0 bits (123), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 155 QGKTKHIKIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGV 210
G+ KHI +++H R+ ++ + +KHC+S+DQ DI TK L+ F LR+ LGV
Sbjct: 2 HGRCKHINVRFHFFRDLPQDGVMELKHCNSQDQLVDIMTKPLKLETFCKLRAKLGV 57
>IMGA|Medtr7g046200.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr07_pseudomolecule_IMGAG_V3
11303402-11302786 H EGN_Mt090430 20090702
Length = 126
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 138 ILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQ 197
+L DN + I + N+P+ ++K+I+ K + R +K+ ++HC++E Q DIF K +
Sbjct: 32 LLVDNNSTIDLHNHPMSHRRSKNIERKLNFQRNQVNKKKPEMEHCNTEMQHADIFAKPSK 91
Query: 198 KPRFEFLRSLLGVHSIT 214
K RF+ L+ L+ + +T
Sbjct: 92 KARFDELKELMRMRRLT 108
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 102 STVEA*YFAASVTVNQAIWLRKILVGLKFLQEKATEILY-DNKAVIAMVNNPVFQGKTKH 160
S+ EA Y A + TV + WL +L LQ +LY D+++ + N F +TKH
Sbjct: 252 SSSEAEYRAMATTVCEIQWLTYLLQDFN-LQFHTPALLYCDSQSARHIAANTSFHERTKH 310
Query: 161 IKIKYHAIREAEKEKEVVIKHCSSEDQATDIFTKALQKPRFEFLRSLLGVHSI 213
I++ H +RE ++K + SS Q D+ TK L F S LG+ I
Sbjct: 311 IELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLKDI 363
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 9/175 (5%)
Query: 4 GSLLYLSISWPDFIFALIILSRFVDAPSETHL*QQ----REF*GTYKAHLIMAYSIENPQ 59
G L YL S D +++ I+S+F+ P +TH R GT + ++ + E Q
Sbjct: 380 GLLRYLCQSRLDISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQ 439
Query: 60 QSN*WDFKIAIRLTLLKT*RAKQAIVFHLDQELFVGEHKK----I*STVEA*YFAASVTV 115
S D+ A + R + +F L KK S+ E Y S
Sbjct: 440 LSM-IDYSDADWCRDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAA 498
Query: 116 NQAIWLRKILVGLKFLQEKATEILYDNKAVIAMVNNPVFQGKTKHIKIKYHAIRE 170
QA WL+ +L ++ ++L DNK I + N + GK+KHI+ K+H +R+
Sbjct: 499 CQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRD 553