Jatropha Genome Database

JcCB0008751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008751.10 - phase: 0 /pseudo/partial
         (189 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU571152_22.1 Forkhead-associated CU571152.5 100554-94827 E...   217   3e-57
IMGA|Medtr5g017270.1 FAD-dependent pyridine nucleotide-disulphid...   209   8e-55
IMGA|Medtr4g024040.1 Fumarate reductase/succinate dehydrogenase ...   149   9e-37

>IMGA|CU571152_22.1 Forkhead-associated CU571152.5 100554-94827 E
           EGN_Mt090430 20090702
          Length = 663

 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 128/174 (73%), Gaps = 25/174 (14%)

Query: 15  QSKQRKSXILSATGGIEGLVFALATRRKDFEVLVFXK----------------------- 51
           Q +++   +L A GGI GLVFALA +RK FEV+VF K                       
Sbjct: 75  QGEKKNLRVLVAGGGIGGLVFALAAKRKGFEVMVFEKDLSAVRGEGQYRGPIQIQSNALA 134

Query: 52  --EAIDLEVAEEVMEAGCVTGDRINGLVDGVSGTWYVKFDTFTPAAERGLPVTRVISRMT 109
             EAID +VA+EVM  GC+TGDRINGLVDGVSG+WYVKFDTFTPA ERGLPVTRVISRMT
Sbjct: 135 ALEAIDSDVADEVMRVGCITGDRINGLVDGVSGSWYVKFDTFTPAVERGLPVTRVISRMT 194

Query: 110 LQQILALAVGEDVIRNESNVVSFQDDGDKVTVTLENGQHFEGDLLVGADGIWSK 163
           LQ ILA AVGED++ N SNVV+F DDG+KVTV LENGQ +EGDLLVGADGIWSK
Sbjct: 195 LQGILARAVGEDIVLNASNVVNFADDGNKVTVELENGQKYEGDLLVGADGIWSK 248


>IMGA|Medtr5g017270.1 FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase chr05_pseudomolecule_IMGAG_V3
           6175728-6179564 E EGN_Mt090430 20090702
          Length = 336

 Score =  209 bits (531), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 125/174 (71%), Gaps = 27/174 (15%)

Query: 15  QSKQRKSXILSATGGIEGLVFALATRRKDFEVLVFXK----------------------- 51
           Q KQ K  +L A GGI GLVFALA +RK FEV+VF K                       
Sbjct: 72  QKKQLK--VLVAGGGIGGLVFALAAKRKGFEVVVFEKDLSAIRGEGQYRGPIQIQSNALA 129

Query: 52  --EAIDLEVAEEVMEAGCVTGDRINGLVDGVSGTWYVKFDTFTPAAERGLPVTRVISRMT 109
             EAID+ VA+EVM  GC+TGDRINGLVDGVSG+WY+KFDTFTPAAERGLPVTRVISRM 
Sbjct: 130 ALEAIDMNVADEVMRVGCITGDRINGLVDGVSGSWYIKFDTFTPAAERGLPVTRVISRMA 189

Query: 110 LQQILALAVGEDVIRNESNVVSFQDDGDKVTVTLENGQHFEGDLLVGADGIWSK 163
           LQ+ILA AVG+DVI N SNVV F D   KVTV L+NGQ ++GDLLVGADGIWSK
Sbjct: 190 LQEILARAVGDDVIMNGSNVVDFIDHETKVTVVLDNGQKYDGDLLVGADGIWSK 243


>IMGA|Medtr4g024040.1 Fumarate reductase/succinate dehydrogenase
           flavoprotein, N-terminal chr04_pseudomolecule_IMGAG_V3
           5419751-5415352 E EGN_Mt090430 20090702
          Length = 465

 Score =  149 bits (376), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 87/112 (77%)

Query: 52  EAIDLEVAEEVMEAGCVTGDRINGLVDGVSGTWYVKFDTFTPAAERGLPVTRVISRMTLQ 111
           EAID  V +++ME GCVTG+RINGL DGVSG W+ + D  TPA+ +GLP+T VI RMTLQ
Sbjct: 111 EAIDESVVKKIMEVGCVTGNRINGLADGVSGEWFTELDLLTPASRKGLPLTLVICRMTLQ 170

Query: 112 QILALAVGEDVIRNESNVVSFQDDGDKVTVTLENGQHFEGDLLVGADGIWSK 163
            IL  A+G ++++N+S VV F  +  KV V LENGQH++GD+LVGADGIWS+
Sbjct: 171 DILVNAIGSNILKNKSKVVDFIQEPSKVRVVLENGQHYDGDILVGADGIWSE 222