Jatropha Genome Database

JcCB0008641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008641.10 + phase: 2 /pseudo/partial
         (246 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g087990.1 hypothetical protein chr05_pseudomolecule_I...   291   2e-79

>IMGA|Medtr5g087990.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 34074315-34072318 E
           EGN_Mt090430 20090702
          Length = 621

 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 154/168 (91%), Gaps = 2/168 (1%)

Query: 42  PWEQWTLVSEVVLEAGKQRIDKWNLMGRLGNQARKLITQCAAWFRPDIIYVKRPVYQCRF 101
           PW+QWTLVSEVVLEAGKQR+DKW LMGRLGN+AR L+ QCAAW RPDI+YVKRPV+QCRF
Sbjct: 252 PWQQWTLVSEVVLEAGKQRLDKWTLMGRLGNKARSLVAQCAAWMRPDIVYVKRPVFQCRF 311

Query: 102 EPQEDFFRGLVPFLDPKTERDFIFELRNEEDGGSVEMCTYYEGLCKIVKVSQKAYVDDVV 161
           EPQ++FF  ++PFLDP+TE+D++ +L N  D GSVE CTYY GLCK+VKV+QKA+VDDVV
Sbjct: 312 EPQDNFFNAIIPFLDPRTEQDYLCQLEN--DDGSVETCTYYGGLCKLVKVNQKAFVDDVV 369

Query: 162 NAYEKLSEEKKSRCLEFLLRNHPVQLLHPYTKEWKAKLEEMELGCDAP 209
           NAY+KLS+EKKS+CLEFLL +HPVQ+LHPYTKEWKAKLEEMELGCDAP
Sbjct: 370 NAYQKLSDEKKSKCLEFLLGHHPVQILHPYTKEWKAKLEEMELGCDAP 417