Jatropha Genome Database

JcCB0008631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.30 + phase: 0 /partial
         (197 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g013030.1 SelT/selW/selH selenoprotein chr04_pseudomo...   185   1e-47
IMGA|Medtr4g012950.1 SelT/selW/selH selenoprotein chr04_pseudomo...   185   1e-47
IMGA|Medtr5g079520.1 SelT/selW/selH selenoprotein chr05_pseudomo...   172   8e-44

>IMGA|Medtr4g013030.1 SelT/selW/selH selenoprotein
           chr04_pseudomolecule_IMGAG_V3 2455614-2451802 E
           EGN_Mt090430 20090702
          Length = 223

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 103/128 (80%), Gaps = 1/128 (0%)

Query: 70  GLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLPKRLLSKVVP 129
           G+G  G G+TV+IDFC SCSY+G A+++KN LE+ FPGIN+VLANYPP LPKR LSKVVP
Sbjct: 67  GVGPIGAGNTVSIDFCTSCSYKGNAVSVKNTLESLFPGINVVLANYPPPLPKRALSKVVP 126

Query: 130 VFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAF 189
           V Q G I  I  G+QIFP+LG   PP  YYSLRAN+FGSIAS WL  NF+QSFLQSSGAF
Sbjct: 127 VLQTGAIIAITAGDQIFPRLG-VTPPQLYYSLRANKFGSIASIWLLSNFVQSFLQSSGAF 185

Query: 190 EVYCNGEL 197
           EVY NGEL
Sbjct: 186 EVYFNGEL 193


>IMGA|Medtr4g012950.1 SelT/selW/selH selenoprotein
           chr04_pseudomolecule_IMGAG_V3 2417265-2413452 F
           EGN_Mt090430 20090702
          Length = 223

 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 103/128 (80%), Gaps = 1/128 (0%)

Query: 70  GLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLPKRLLSKVVP 129
           G+G  G G+TV+IDFC SCSY+G A+++KN LE+ FPGIN+VLANYPP LPKR LSKVVP
Sbjct: 67  GVGPIGAGNTVSIDFCTSCSYKGNAVSVKNTLESLFPGINVVLANYPPPLPKRALSKVVP 126

Query: 130 VFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAF 189
           V Q G I  I  G+QIFP+LG   PP  YYSLRAN+FGSIAS WL  NF+QSFLQSSGAF
Sbjct: 127 VLQTGAIIAITAGDQIFPRLG-VTPPQLYYSLRANKFGSIASIWLLSNFVQSFLQSSGAF 185

Query: 190 EVYCNGEL 197
           EVY NGEL
Sbjct: 186 EVYFNGEL 193


>IMGA|Medtr5g079520.1 SelT/selW/selH selenoprotein
           chr05_pseudomolecule_IMGAG_V3 29652974-29656034 E
           EGN_Mt090430 20090702
          Length = 230

 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 101/197 (51%), Positives = 124/197 (62%), Gaps = 5/197 (2%)

Query: 1   MDRSQXXXXXXXXXXXXTDIVNLFTIQPPPKPALNDYNIIXXXXXXXXXXXXXXXXXXXX 60
           MDR+Q            +D+ +LFT      P     +                      
Sbjct: 1   MDRAQLLLVGLPLFLLCSDLFSLFTSS----PPPPKPSHHHHHHHQQPQPVINPVTTPFP 56

Query: 61  XKSPSMAIGGLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPSLP 120
             S  +A   +G  G G+TVNI+FC+SCSY+GTA+T+K MLE  FPGI ++ ANYPP LP
Sbjct: 57  SDSEKLAT-NIGGAGFGNTVNINFCSSCSYKGTAVTVKKMLEIAFPGIEVIPANYPPPLP 115

Query: 121 KRLLSKVVPVFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNFIQ 180
           KRLLSKVVPV Q G+IG+++ GEQIFP LGF  PP WY+SLRANRFG+IA+TWL GN +Q
Sbjct: 116 KRLLSKVVPVVQIGVIGVVVAGEQIFPMLGFVAPPPWYFSLRANRFGTIATTWLLGNAVQ 175

Query: 181 SFLQSSGAFEVYCNGEL 197
           SFLQSSGAFEVY NG L
Sbjct: 176 SFLQSSGAFEVYFNGNL 192