Jatropha Genome Database

JcCB0008631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.20 + phase: 0 /partial
         (245 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g092760.1 MADF chr07_pseudomolecule_IMGAG_V3 20488629...    64   8e-11

>IMGA|Medtr7g092760.1 MADF chr07_pseudomolecule_IMGAG_V3
           20488629-20486682 E EGN_Mt090430 20090702
          Length = 388

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 66/157 (42%), Gaps = 20/157 (12%)

Query: 51  NTRSIHKLYRNGIXXXXXXXXXXXXXXXXXXXXFRIRIPTEVSIAQPGPKFYAKVDQKYT 110
           NTRS+ KLYRN                      FRIRIPT VS+AQPG KFY K++    
Sbjct: 203 NTRSLDKLYRN----------GVSGGFGGSGSGFRIRIPTGVSVAQPGSKFYPKMNNNSE 252

Query: 111 GXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXDEIGKKREREPMEEMVAAVKVLGDGF 170
                                              ++ ++RER+P+ EMV A+KVL DGF
Sbjct: 253 SGSR----------INGGTRLVKERVVLGKRERERDVERERERDPIGEMVNAIKVLRDGF 302

Query: 171 VRMEQMKXXXXXXXXXXXXXXXXXXXXXILESQQHIV 207
           VRMEQMK                     ILESQQ IV
Sbjct: 303 VRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIV 339