Jatropha Genome Database

JcCB0008321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.20 + phase: 0 /partial
         (152 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096720.1 Transcriptional factor B3 chr07_pseudomolec...    62   1e-10

>IMGA|Medtr7g096720.1 Transcriptional factor B3
           chr07_pseudomolecule_IMGAG_V3 21710203-21713365 H
           EGN_Mt090430 20090702
          Length = 314

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 70/162 (43%), Gaps = 26/162 (16%)

Query: 1   MMKEQGAGH-----EKPEARAWMAGGD----VVTVEGDKAXXXXXXXXXXXXXXXXXRIG 51
           MM ++G G      +K EA  +MAG +     V V+GD                   RI 
Sbjct: 1   MMMDEGEGKKKVVVQKTEACGFMAGVEDELGFVNVKGDN------------NNGSGQRIH 48

Query: 52  LTRNEVVAAVLGFGVI-RKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXX 110
                V AA   FG + RKKRM RQRR SS+   +                         
Sbjct: 49  HDHGFVAAA---FGTVHRKKRMARQRRSSSSTITI-HLKNLPSSTTTTTTTTTSHVPISP 104

Query: 111 XXXXXXXXXXARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
                     AR ID RRL FLFQKELKNSDVSSL+RM+LPK
Sbjct: 105 IPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPK 146