Jatropha Genome Database

JcCB0008321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.10 + phase: 0 /pseudo/partial
         (160 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g083820.1 Armadillo chr07_pseudomolecule_IMGAG_V3 179...    99   1e-21

>IMGA|Medtr7g083820.1 Armadillo chr07_pseudomolecule_IMGAG_V3
           17996273-17994569 E EGN_Mt090430 20090702
          Length = 560

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 13/112 (11%)

Query: 6   SVVNEITQNLAEEGSGKFMINLVDCGILF-------------TANNDNLKRIIISKDRIR 52
           S V E+ Q LA+EG  + MINL+ CG+L              TA+N++LK+ +IS+  +R
Sbjct: 306 SAVPEVRQVLAQEGIARVMINLLTCGMLLGSKEYAAECLQNLTASNESLKKSVISEGGVR 365

Query: 53  NPLAYLDGPLPQESVVRTLKNLVILVSAEIMASLGFLSSLIHVIEPGSLGAQ 104
           + LAYLDGPLPQES V  L+NLV  VS   + SLG L  L+HV++ GS GAQ
Sbjct: 366 SLLAYLDGPLPQESAVAALRNLVGSVSETALVSLGLLPRLVHVLKSGSPGAQ 417