Jatropha Genome Database

JcCB0008031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008031.20 + phase: 0 
         (481 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g143290.1 Lipocalin-related protein and Bos/Can/Equ a...   584   e-167
IMGA|Medtr7g143290.2 hypothetical protein chr07_pseudomolecule_I...    62   7e-10
IMGA|Medtr4g141060.1 Violaxanthin de-epoxidase chr04_pseudomolec...    52   8e-07

>IMGA|Medtr7g143290.1 Lipocalin-related protein and Bos/Can/Equ
           allergen; Calycin chr07_pseudomolecule_IMGAG_V3
           34369728-34366079 E EGN_Mt090430 20090702
          Length = 458

 Score =  584 bits (1505), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/448 (66%), Positives = 349/448 (77%), Gaps = 20/448 (4%)

Query: 39  IVVLKILPNSRKSRRHVQLIRSYRNYCGLVL-RCSHQFSGWTNKFPSFSSTAASINKAKE 97
           + V K+LP    +R H   +R  RN  GLV+ +C H         P  SS  + I   + 
Sbjct: 26  LAVFKVLP----TRLH--FLRHDRNSRGLVVCQCQHHHHKGK---PDSSSNISRI--LEN 74

Query: 98  VLNFLMLSVSNNLKEKGQLQFLKVAGILACALLVIPSADAVDALKTCACLLKECRLELXX 157
            +N +++     L++    + +++  IL   L+++PSADAVDALKTCACLLKECR+EL  
Sbjct: 75  GVNRMLVV----LEDWRNSRIIQLVAILVSILMIVPSADAVDALKTCACLLKECRVELAK 130

Query: 158 XXXXXXXXXXXXXLQTCNNRPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPKKSDVG 217
                        LQTCNNRPDETECQIKCGD+FEN VVDEFNECAVSRKKCVPKKSDVG
Sbjct: 131 CLANPSCAANIACLQTCNNRPDETECQIKCGDVFENKVVDEFNECAVSRKKCVPKKSDVG 190

Query: 218 EFPVPDPAVLVKSFNIADFSGKWFITSGLNPTFDTFDCQLHDFHRESNRLVGNLSWRIRT 277
           EFPVP+P VLVKSFNIADFSGKWFITSGLNPTFD FDCQLH+FH ESN+LVGN++WRI T
Sbjct: 191 EFPVPNPDVLVKSFNIADFSGKWFITSGLNPTFDAFDCQLHEFHTESNKLVGNITWRIPT 250

Query: 278 PDGGFFTRSTVQKFVQDPLQPGILYNHDNEYLHYQDDWYILSSKLENSENDYIFVYYRGR 337
           PDGGF TRS VQ+FVQDP  PGILYNHDNEYL+YQDDWY++SS++EN  +DYIF+YYRGR
Sbjct: 251 PDGGFLTRSAVQRFVQDPSNPGILYNHDNEYLNYQDDWYVVSSQIENKPDDYIFIYYRGR 310

Query: 338 NDAWDGYGGAVVYTRSAVLPESIIPELETAAKKVGRDFNKFIITDNTCGPEPPLAERIEK 397
           NDAWDGYGGAVVYTRSAVLPESIIPEL+ AAK VGRDF+KFI TDNTCGPEP + ER+EK
Sbjct: 311 NDAWDGYGGAVVYTRSAVLPESIIPELDRAAKSVGRDFSKFIRTDNTCGPEPSIVERLEK 370

Query: 398 TVEEGEKTIIR----EVEEIEGNVEKVGKTEMALFQRLAEGFKELQQDEEFFVRELSKEE 453
            VEEGEKTI+R      EE+E ++EKVGKTEM L QRLAEGFK  Q+DEE F+R LSKEE
Sbjct: 371 KVEEGEKTIVREVEELEEEVEKDLEKVGKTEMTLLQRLAEGFKVFQEDEENFLRGLSKEE 430

Query: 454 MDILNDLKMEAGEVEKLFGEALPLRKLR 481
           M+IL+ LK+EA EVE+LFG ALPLRKLR
Sbjct: 431 MEILDSLKLEAEEVEELFGRALPLRKLR 458


>IMGA|Medtr7g143290.2 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 34369728-34368704 E
           EGN_Mt090430 20090702
          Length = 132

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 16/115 (13%)

Query: 39  IVVLKILPNSRKSRRHVQLIRSYRNYCGLVL-RCSHQFSGWTNKFPSFSSTAASINKAKE 97
           + V K+LP    +R H   +R  RN  GLV+ +C H      +       ++++I++  E
Sbjct: 26  LAVFKVLP----TRLH--FLRHDRNSRGLVVCQCQH------HHHKGKPDSSSNISRILE 73

Query: 98  VLNFLMLSVSNNLKEKGQLQFLKVAGILACALLVIPSADAVDALKTCACLLKECR 152
                ML V  + +     + +++  IL   L+++PSADAVDALKTCACLLKECR
Sbjct: 74  NGVNRMLVVLEDWRNS---RIIQLVAILVSILMIVPSADAVDALKTCACLLKECR 125


>IMGA|Medtr4g141060.1 Violaxanthin de-epoxidase
           chr04_pseudomolecule_IMGAG_V3 34733253-34736761 E
           EGN_Mt090430 20090702
          Length = 529

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 106/271 (39%), Gaps = 24/271 (8%)

Query: 140 ALKTCACLLKECRLELXXXXXXXXXXXXXXXLQTCNNRPDETECQIKCGDLFENNVVDEF 199
              T  C+LK C  ++               L  C+  P +  C  +C   +E+  ++ F
Sbjct: 244 GFSTLNCMLKNCGRQVLNCLLDPNCRKALQCLNKCS--PVDQVCNYRCIASYESANLEAF 301

Query: 200 NECAVSRKKCVPKKSDVGEFPVPDPAVLVKSFNIAD------FSG-------KWFITSGL 246
           + C + +  C+  +++V   P   P V  +  N++       F G        W + +G 
Sbjct: 302 SLCVLQKNNCLELEAEVPTKPYVPPMVEFRGQNLSHEIAEDLFVGWLGSLQWSWRVVAGQ 361

Query: 247 NPTFDTFDCQLHDFHRESNRLVGNLSW----RIRTPDGGFFTRSTVQKFVQDPLQPGILY 302
           NP +D F CQ   F+R   +  G+  +    +++T +G    R    +  +  +     +
Sbjct: 362 NPAYDQFPCQYQLFYRGKAK--GSFWYEPVFQVKTFEGQMVWRRRKYRVKRGKVYGTFYF 419

Query: 303 NHDNEYLHYQDDWYILSSKLENSENDYIFVYYRGRNDAWDGYGGAVVYTRSAVLP-ESII 361
           +  +  +   + W I+   + N  +  +F Y+     A   Y GAV+ +     P E   
Sbjct: 420 SVLDNGVISNEFWTIVD--VANDLSWGLFHYHGAAKAAGQSYTGAVLVSPDGAFPNERER 477

Query: 362 PELETAAKKVGRDFNKFIITDNTCGPEPPLA 392
            ++ TA +K      +    DN    +PPL 
Sbjct: 478 TKIVTALEKCEIKEWELFFVDNCSCIDPPLG 508