Jatropha Genome Database
- JcCB0007881.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0007881.10 + phase: 2 /TE
(218 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 111 2e-25
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 97 4e-21
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 91 3e-19
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 91 5e-19
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 89 1e-18
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 82 1e-16
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 73 1e-13
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 73 1e-13
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 72 1e-13
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 70 6e-13
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 65 3e-11
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 64 4e-11
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 56 1e-08
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 55 2e-08
IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H... 53 1e-07
IMGA|Medtr7g046200.1 Polynucleotidyl transferase, Ribonuclease H... 50 9e-07
IMGA|Medtr4g104330.1 hypothetical protein chr04_pseudomolecule_I... 49 1e-06
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 49 2e-06
IMGA|Medtr2g037300.1 Polynucleotidyl transferase, Ribonuclease H... 47 6e-06
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 83 IDRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLK 142
+ R+STSG LGSA +S +KKQ +V+ S++EA+Y G V++V+W++ L+ +
Sbjct: 164 LTRRSTSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVH 223
Query: 143 LETVPIK-CENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADI 201
++ + C+N + ++L+ NPV H RTKHIE+ HFIR H+Q+G I ++PT+KQ ADI
Sbjct: 224 YDSPTVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADI 283
Query: 202 FTKPLNESQF 211
FTK L QF
Sbjct: 284 FTKALGAKQF 293
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 79/128 (61%), Gaps = 1/128 (0%)
Query: 85 RKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLE 144
R+S SG C FLG++L+S +KKQI+V+ S++EA+Y S ++ WI L D
Sbjct: 1259 RRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILYLLKDLHTTCP 1318
Query: 145 TVPI-KCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFT 203
+P+ C+N S I+++ NPV H RTKH+E+ H IRD +Q G + + + ++ Q+AD FT
Sbjct: 1319 KLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVADFFT 1378
Query: 204 KPLNESQF 211
K L F
Sbjct: 1379 KALLPKPF 1386
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 85 RKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLE 144
RKS +G C FLG++L+S +KKQ +V+ S++EA+Y S ++ W+ L D +
Sbjct: 1105 RKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHITCS 1164
Query: 145 TVPI-KCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFT 203
P+ C+N S ++++ NPV H RTKH+E+ H +R+ +Q G + + + ++ Q+AD FT
Sbjct: 1165 KPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQIADFFT 1224
Query: 204 KPLNESQFCSIRREL 218
K L F + +L
Sbjct: 1225 KALLPKTFSLLLSKL 1239
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 81/128 (63%), Gaps = 1/128 (0%)
Query: 85 RKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLE 144
R+S SG C FLG++L+S +KKQ++V+ S++EA+Y S ++ W+ L D +
Sbjct: 1233 RRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIYLLQDLHVTCT 1292
Query: 145 TVPIK-CENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFT 203
+P+ C+N S ++++ NPV H RTKH+E+ H +R+ + G + + + +++Q+AD FT
Sbjct: 1293 KLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVADFFT 1352
Query: 204 KPLNESQF 211
K L+ F
Sbjct: 1353 KSLHPQPF 1360
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 84/137 (61%), Gaps = 5/137 (3%)
Query: 85 RKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLE 144
R+S SG C FLG +L+S +KKQ++V+ S++EA+Y G+ ++ W+ L D L +
Sbjct: 1250 RRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLLYLLHD--LHVT 1307
Query: 145 TVPIK---CENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADI 201
TV + C+N S ++++ NPV H RTKH+E+ H +R+ +Q + + + + QLAD
Sbjct: 1308 TVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPVTSADQLADF 1367
Query: 202 FTKPLNESQFCSIRREL 218
FTKPL F ++ +L
Sbjct: 1368 FTKPLLPQPFHTLLFKL 1384
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 145 TVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTK 204
V +K +N S INL++N + H + KH+E R HF+RD V K +I+E+ PT+ QL D+FTK
Sbjct: 11 AVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQDQLTDLFTK 70
Query: 205 PLNESQFCSIRREL 218
L QF +RRE+
Sbjct: 71 ALKRDQFLKLRREI 84
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 146 VPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKP 205
V +K +NISTINL++NP+ H R+KHIE+R H++R+ V KG + +E +E Q+AD+ TK
Sbjct: 25 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKG 84
Query: 206 LNESQFCSIR 215
+ F R
Sbjct: 85 VKIEVFTKPR 94
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 126 VAQVLWIKQXLADY-GLKLETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQK 184
V Q LWI+ + +++ + + +N STI+L+++P+ H +KHIE + HF+RD V K
Sbjct: 4 VRQALWIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNK 63
Query: 185 GYIIIEFIPTEKQLADIFTKPLNESQFCSIRR 216
+ +E+ TE QLA+IFTKPL ++ F +++
Sbjct: 64 MKLDLEYCNTEVQLANIFTKPLKKAMFDELKK 95
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 146 VPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKP 205
V +K +NISTINL++NP+ H R+KHIE+R H++R+ V KG + +E +E Q+AD+ TK
Sbjct: 116 VTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKG 175
Query: 206 LNESQFCSIR 215
+ F R
Sbjct: 176 VKIEVFTKPR 185
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236
H EGN_Mt090430 20090702
Length = 89
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 148 IKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKPLN 207
+K +N STINL++NP+ R+KHI+ R HFIR+ V K I +E+ PTE QL D FTK
Sbjct: 14 LKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPTEVQLGDGFTKAFK 73
Query: 208 ESQFCSIRREL 218
+F +R +L
Sbjct: 74 IDRFTCLRDKL 84
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 109 SVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLETVPI-KCENISTINLSENPVQHSR 167
+V+ S++EA+Y + V ++ W+ L D+ L+ T + C++ S +++ N H R
Sbjct: 248 TVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHER 307
Query: 168 TKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKPLNESQFCSIRREL 218
TKHIEL H +R+ +Q+ + + + +QLAD+ TKPL+ F + +L
Sbjct: 308 TKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKL 358
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 94 FLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLETVPIKC--E 151
L A +S SKKQ VALS+ E +YV S Q W++ L +KL+ PIK +
Sbjct: 466 MLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQ-PIKLLID 524
Query: 152 NISTINLSENPVQHSRTKHIELRHHFIRDHVQK 184
N INL++N + H ++KHIE + H++RD V K
Sbjct: 525 NKYAINLAKNHISHGKSKHIETKFHYLRDQVNK 557
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 113 STTEAKYVTAGSCVAQVLWIKQXLADYGLKLETVPI-KCENISTINLSENPVQHSRTKHI 171
S++EA+Y S ++ + L D + P+ C+N S I ++ NPV H TKH+
Sbjct: 53 SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVFHECTKHL 112
Query: 172 ELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKPLNESQF 211
E+ H +R+ +Q G + I ++ Q+AD FTK L F
Sbjct: 113 EIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPF 152
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 81 DRIDRKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADY- 139
D+ D+KST+ +G+A +S SKKQ VALS++EAKYV Q LWI+ L +
Sbjct: 67 DQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEELN 126
Query: 140 GLKLETVPIKCENISTINLSENPVQHSR 167
+++ + + +N I+L++ P+ H +
Sbjct: 127 AFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr5g049090.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
20905948-20906136 H EGN_Mt090430 20090702
Length = 62
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 165 HSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKPLNESQFCSIRREL 218
H R KHI +R HF RD Q G + ++ ++ QL DI TKPL FC +R +L
Sbjct: 2 HGRCKHINVRFHFFRDLPQDGVMELKHCNSQDQLVDIMTKPLKLETFCKLRAKL 55
>IMGA|Medtr7g046200.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr07_pseudomolecule_IMGAG_V3
11303402-11302786 H EGN_Mt090430 20090702
Length = 126
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 151 ENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFTKPLNESQ 210
+N STI+L +P+ H R+K+IE + +F R+ V K +E TE Q ADIF KP +++
Sbjct: 35 DNNSTIDLHNHPMSHRRSKNIERKLNFQRNQVNKKKPEMEHCNTEMQHADIFAKPSKKAR 94
Query: 211 FCSIR 215
F ++
Sbjct: 95 FDELK 99
>IMGA|Medtr4g104330.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711685-22712637 H
EGN_Mt090430 20090702
Length = 196
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 161 NPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFT 203
NP+ H ++K IE R HF+ D V K + +E+ PT+ QLAD+ T
Sbjct: 135 NPIFHGKSKRIETRLHFLSDQVNKNTLSVEYCPTQDQLADLVT 177
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 85 RKSTSGTCQFLGSALVSXFSKKQISVALSTTEAKYVTAGSCVAQVLWIKQXLADYGLKLE 144
R+S SG C F+G++L+S +KKQ +V+ S++EA+Y S ++ WI L D ++
Sbjct: 190 RRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYLLKDLNIQSS 249
Query: 145 TVPIK-CEN 152
+P+ C+N
Sbjct: 250 KLPVLFCDN 258
>IMGA|Medtr2g037300.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr02_pseudomolecule_IMGAG_V3
10080348-10077273 E EGN_Mt090430 20090702
Length = 117
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 144 ETVPIKCENISTINLSENPVQHSRTKHIELRHHFIRDHVQKGYIIIEFIPTEKQLADIFT 203
E + + +N ST+N + NP+ H + K+ HF+RD V K II+ + T + DI T
Sbjct: 7 EQIEMLVDNKSTLNHTRNPIIHGKIKY-----HFLRDQVNKNKIILTYYETYDLVVDILT 61
Query: 204 KPL 206
KPL
Sbjct: 62 KPL 64