Jatropha Genome Database

JcCB0007551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0007551.10 + phase: 1 /partial
         (315 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g068920.1 Arabidopsis retrotransposon ORF-1 protein c...    86   2e-17
IMGA|AC235758_14.1 Arabidopsis retrotransposon ORF-1 protein AC2...    86   2e-17

>IMGA|Medtr5g068920.1 Arabidopsis retrotransposon ORF-1 protein
           chr05_pseudomolecule_IMGAG_V3 24809489-24810562 H
           EGN_Mt090430 20090702
          Length = 357

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 16  PPSRVNFRLLSQDFELTVNEISHIFGFPTDNSQIQISSDFSARNT-------WQNLTGEV 68
           P   V+F L + ++ +++ E S I GF +    I +S +  AR+        W  +TG  
Sbjct: 109 PNHTVSFSLGNVEYNMSLTEFSDIMGFES-TGVIHVSRNHDARHRGYDKHGFWFQITGRK 167

Query: 69  NYNPRYSKASKLKKPSLRYIHKFLSNSIFGRSESDGVLSLNELYFLWAIENGVLLNVGYW 128
            Y  + +KAS ++ P  RY+H+ ++ +IFGR E+  V S +EL+ LWA+ +   +N GY+
Sbjct: 168 RYECKTAKASMIQNPVFRYLHRVMACTIFGRPETATVRS-DELFLLWAMVHKCPVNTGYY 226

Query: 129 LCQKFGKVAGADKGAIMVGCFITRIARYLQVWNPARPIYDCVGGGRGTRLDLDVMIHM 186
           L      VA   KG I+ G  ++ IA  L   +    I   + G     +D    IHM
Sbjct: 227 LLDHLTYVAEQPKGKIVAGGLVSFIAWKLGARSATHEI--GIDGNYTIDIDFCKQIHM 282


>IMGA|AC235758_14.1 Arabidopsis retrotransposon ORF-1 protein
           AC235758.1 80036-78846 H EGN_Mt090430 20090702
          Length = 396

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 11/179 (6%)

Query: 15  SPPSRVNFRLLSQDFELTVNEISHIFGFPTDNSQIQISSDFSARNT-------WQNLTGE 67
           +P   V+F L + ++ +++ E S + GF +    I +S +  AR         W  +TG 
Sbjct: 108 NPNHTVSFSLGNVEYYMSLTEFSDLMGFES-TGVIHVSRNHDARRRGYDKHGFWFQITGR 166

Query: 68  VNYNPRYSKASKLKKPSLRYIHKFLSNSIFGRSESDGVLSLNELYFLWAIENGVLLNVGY 127
            +Y  + +KAS ++ P  RY+H+ ++ +IFGR E+  V S +EL+ LWA+ +   +N GY
Sbjct: 167 KHYECKTAKASMIQNPVFRYLHRVMACTIFGRPETATVRS-DELFLLWAMVHKCPVNTGY 225

Query: 128 WLCQKFGKVAGADKGAIMVGCFITRIARYLQVWNPARPIYDCVGGGRGTRLDLDVMIHM 186
           +L      VA   KG I+ G  ++ IA  L   +  + I   + G     +D    IHM
Sbjct: 226 YLLDHLAYVAEQPKGKIVAGGLVSFIAWKLGARSATQEI--GIDGNDTIDIDFCKQIHM 282