Jatropha Genome Database

JcCB0006821.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.30 + phase: 0 
         (362 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g080590.1 hypothetical protein chr02_pseudomolecule_I...   176   1e-44
IMGA|Medtr2g080590.2 hypothetical protein chr02_pseudomolecule_I...    62   5e-10

>IMGA|Medtr2g080590.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 18594302-18600011 E
           EGN_Mt090430 20090702
          Length = 330

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/267 (37%), Positives = 149/267 (55%), Gaps = 15/267 (5%)

Query: 100 EDIQIIAKFKSRYNYIRVLEVSRKVDHPLAGSRLLLLDDPGNIHSISFSHKLLTNTYFDV 159
           E  QI+   K+ YN+I +++  +        S +LLLD   N+HSI +  K  TN+Y+D 
Sbjct: 65  ESFQILTSVKTDYNHIMIVDTPK--------STMLLLDSSHNVHSILYKDKKWTNSYWDE 116

Query: 160 FATLPPILPPGPVAILGFGAGSAARLILELYQNGRVHGWELDPSVIAVGRKYFGLERLER 219
           F++LP I+P GP+AILG G G+AA L+LEL+   ++ GWE+D  +I   R YFGL  LE+
Sbjct: 117 FSSLPAIVPKGPIAILGLGGGTAAHLMLELWPALQLEGWEIDDILIDKARDYFGLSDLEK 176

Query: 220 DFSDR--LFIYIGNALSLESYVRDGFSGILVDLFSKGSVIPELQDPNTWEEFTRCLRKGG 277
              D   L ++IG+A      +   ++GI+VDLFS G V+P+LQ+ +TW E    L   G
Sbjct: 177 TNEDGGILNVHIGDAFIPSDDLHRRYAGIVVDLFSDGKVLPQLQEVSTWLELHDRLMANG 236

Query: 278 RIMVNVGG-----RCVEAEDKRRDGAVVMQDTLKAMHQVFGDNLFVLSLGSQNDDSTIAL 332
           R MVN GG        + +    D A ++   +KA+ + F   L    +  +   + +AL
Sbjct: 237 RFMVNCGGIDGVDGSTDPKKLSNDEAWLLNAAIKALLKAFPGQLSWKRMPKETGQNFMAL 296

Query: 333 TGELPDLDAWKSVVPRSLRFYMDMWTP 359
           TG LPDL +W + VP  L   +  W P
Sbjct: 297 TGPLPDLKSWSANVPSPLSTGVMDWKP 323


>IMGA|Medtr2g080590.2 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 18594292-18598339 E
           EGN_Mt090430 20090702
          Length = 146

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 12/82 (14%)

Query: 100 EDIQIIAKFKSRYNYIRVLEVSRKVDHPLAGSRLLLLDDPGNIHSISFSHKLLTNTY--- 156
           E  QI+   K+ YN+I +++  +        S +LLLD   N+HSI +  K  TN+Y   
Sbjct: 65  ESFQILTSVKTDYNHIMIVDTPK--------STMLLLDSSHNVHSILYKDKKWTNSYWVC 116

Query: 157 -FDVFATLPPILPPGPVAILGF 177
            +D F++LP I+P GP+AILG+
Sbjct: 117 MYDEFSSLPAIVPKGPIAILGW 138