Jatropha Genome Database

JcCB0006821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.20 + phase: 0 /partial
         (272 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g114600.1 Histone deacetylase superfamily chr03_pseud...   459   e-130
IMGA|AC151525_27.1 Histone deacetylase AC151525.18 138824-145575...   335   2e-92
IMGA|Medtr3g164120.1 Histone deacetylase superfamily chr03_pseud...   333   5e-92
IMGA|Medtr4g073130.1 Histone deacetylase chr04_pseudomolecule_IM...   280   7e-76
IMGA|Medtr2g105140.1 Histone deacetylase superfamily chr02_pseud...    89   2e-18
IMGA|Medtr1g020580.1 Histone deacetylase superfamily chr01_pseud...    49   2e-06
IMGA|Medtr4g142910.1 Histone deacetylase superfamily chr04_pseud...    49   3e-06

>IMGA|Medtr3g114600.1 Histone deacetylase superfamily
           chr03_pseudomolecule_IMGAG_V3 29075878-29069797 E
           EGN_Mt090430 20090702
          Length = 471

 Score =  459 bits (1180), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 236/269 (87%), Gaps = 2/269 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTG G GK+YALN+PL
Sbjct: 185 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGPGKDYALNVPL 244

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           NDGMDDE+FR LFRPI+QKVM++YQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
Sbjct: 245 NDGMDDENFRALFRPIMQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 304

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPLMVLGGGGYT+RNVARCWCYETA+AVGVEP NKLPYNEYYEYFGPDYTLH+EP+
Sbjct: 305 RSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNKLPYNEYYEYFGPDYTLHVEPN 364

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQXXXXXXXXXXXXXXDMDRRPKRRIWN 240
           NMENLN+PKDME+IRN LLEQ+++LP+APS PFQ              DMD RPKR++W+
Sbjct: 365 NMENLNTPKDMEKIRNTLLEQIARLPHAPSAPFQTTPSTAEVPEVEEEDMDIRPKRQLWS 424

Query: 241 GEDYESDPDED--GELRPRRLNNDSRAVA 267
           GEDY+SDPDED    +R   L +  R  A
Sbjct: 425 GEDYDSDPDEDEKANIRSSSLTSHMRRAA 453


>IMGA|AC151525_27.1 Histone deacetylase AC151525.18 138824-145575 E
           EGN_Mt090430 20090702
          Length = 584

 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 157/214 (73%), Positives = 192/214 (89%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG ++D G G+GK Y+LN+PL
Sbjct: 270 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPL 329

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           +DG+DDES+  LF+P++ KVME+++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++++
Sbjct: 330 DDGIDDESYHSLFKPLMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYM 389

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPL++LGGGGYTIRNVARCWCYET +A+G+E D+K+P +EYYEYFGPDY LH+ PS
Sbjct: 390 RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIELDDKMPQHEYYEYFGPDYALHVAPS 449

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
           NMEN NS   ++ IR  LLE LS+L +APSVPFQ
Sbjct: 450 NMENKNSRPLLDDIRAKLLENLSRLQHAPSVPFQ 483


>IMGA|Medtr3g164120.1 Histone deacetylase superfamily
           chr03_pseudomolecule_IMGAG_V3 43246462-43252025 E
           EGN_Mt090430 20090702
          Length = 446

 Score =  333 bits (854), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 193/214 (90%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG ++D G G+GK Y+LN+PL
Sbjct: 178 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDLRDIGYGKGKYYSLNVPL 237

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           +DG+DDES+  LF+P+I KVMEI++P AVVLQCGADSLSGDRLGCFNLS++GHA+C+R++
Sbjct: 238 DDGIDDESYHLLFKPLICKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYM 297

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPL++LGGGGYTIRNVARCWCYET +A+G+E D+K+P +EYYEYFGPDYTLH+ PS
Sbjct: 298 RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPEHEYYEYFGPDYTLHVAPS 357

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
           NMEN N+   ++ IR+ LLE LSKL +APSV FQ
Sbjct: 358 NMENKNTRHLLDNIRSKLLENLSKLQHAPSVQFQ 391


>IMGA|Medtr4g073130.1 Histone deacetylase
           chr04_pseudomolecule_IMGAG_V3 14366558-14356964 E
           EGN_Mt090430 20090702
          Length = 405

 Score =  280 bits (715), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 165/215 (76%), Gaps = 1/215 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDTGAGQGKNYALNIP 59
           RVLY+DIDVHHGDGVEEAFY TDRVMTVS HK+GD FFPGTG  K+ G  +GK YA+N+P
Sbjct: 140 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSSHKYGDLFFPGTGDAKEIGEREGKFYAINVP 199

Query: 60  LNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 119
           L DG+DD SF  LF+ II KV+E YQP A+VLQCGADSL+GDRLGCFNLS+ GHA+C+RF
Sbjct: 200 LKDGIDDSSFTRLFKTIISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRF 259

Query: 120 LRSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEP 179
           ++ FNVPL+V GGGGYT  NVARCW  ET + +  E  N++P N+Y +YFGPD++L I  
Sbjct: 260 VKKFNVPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFGPDFSLKIPN 319

Query: 180 SNMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
             +ENLNS   +  I+  ++E L  + +APSV  Q
Sbjct: 320 GFIENLNSKSYLSTIKMQVMENLRCIQHAPSVQMQ 354


>IMGA|Medtr2g105140.1 Histone deacetylase superfamily
           chr02_pseudomolecule_IMGAG_V3 24992741-24995720 F
           EGN_Mt090430 20090702
          Length = 386

 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 9/152 (5%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFH----KFGDFFPGTGHIKDTGAGQGKNYAL 56
           +V  +DIDVH+G+G  E FY++++V+TVS H     +G   P +G I + G G+G  Y L
Sbjct: 184 KVAVIDIDVHYGNGTAEGFYSSNKVLTVSLHMNHGSWGPSHPQSGSIDELGDGEGYGYNL 243

Query: 57  NIPLNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADC 116
           NIPL +G  D  +   F  ++   +  ++PD +VL  G DS + D  G   L+++G+ + 
Sbjct: 244 NIPLPNGTGDNGYVYAFNELVVPSIHKFEPDMIVLVVGQDSSAFDPNGRQCLTMEGYREI 303

Query: 117 LRF-----LRSFNVPLMVLGGGGYTIRNVARC 143
            R      +R  +  L+++  GGY +   A C
Sbjct: 304 GRIVHGLAMRHSDGRLLIVQEGGYHVTYSAYC 335


>IMGA|Medtr1g020580.1 Histone deacetylase superfamily
           chr01_pseudomolecule_IMGAG_V3 4528083-4533826 F
           EGN_Mt090430 20090702
          Length = 350

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 13/146 (8%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RV+ +D+D H G+G E  F   +RV  +  +  G  +P   H   +   Q       + +
Sbjct: 190 RVIIIDLDAHQGNGHEMDFADDNRVYILDMYNPG-IYP-LDHEARSYINQ------KVEV 241

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHA----DC 116
             G   E +       ++     + P+ +V   G D L GD LG   +S  G A      
Sbjct: 242 KSGTRTEEYLLKLDEALEVAGRRFNPELLVYNAGTDILEGDPLGRLKISPDGIALRDEKV 301

Query: 117 LRFLRSFNVPLMVLGGGGYTIRNVAR 142
            RF R  N+P+++L  GGY +++ AR
Sbjct: 302 FRFARKKNIPIVMLTSGGY-MKSSAR 326


>IMGA|Medtr4g142910.1 Histone deacetylase superfamily
           chr04_pseudomolecule_IMGAG_V3 35705033-35704123 E
           EGN_Mt090430 20090702
          Length = 163

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 38/74 (51%)

Query: 37  FPGTGHIKDTGAGQGKNYALNIPLNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGAD 96
           +PGTG   + GAG G+   LN+PL  G  D + R +F  ++    + ++PD +++  G D
Sbjct: 7   YPGTGKFDEVGAGDGEGTTLNLPLPGGSGDTAIRSVFDEVVVPCAQRFKPDIILVSAGYD 66

Query: 97  SLSGDRLGCFNLSV 110
               D L    L+ 
Sbjct: 67  GHVLDPLANLQLTT 80