Jatropha Genome Database

JcCB0006421.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.30 + phase: 0 /partial
         (233 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC146557_13.1 Winged helix repressor DNA-binding AC146557.3...   119   9e-28
IMGA|Medtr3g156310.1 Transcription factor E2F/dimerisation partn...   106   8e-24

>IMGA|AC146557_13.1 Winged helix repressor DNA-binding AC146557.33
           75654-81329 F EGN_Mt090430 20090702
          Length = 460

 Score =  119 bits (299), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 89/148 (60%), Gaps = 5/148 (3%)

Query: 90  ETHSAFSKLAQLKQTNEKVNHEAQYGGQEPFAKHNKVPNHVLDPQSATRSKRINRAKVSK 149
           ET +   K  QLK+ +E  + EA  G +          + V  P S    K    ++++K
Sbjct: 51  ETEAIVVKTPQLKRKSEAADFEADSGDRMTPGSTAAANSSVQTPVSGKAGKGGKSSRMTK 110

Query: 150 NGKLGIQ--GSNAESPNG--LNPATGCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADV 205
             + G Q  GSN  SP+G  L PA  CRYDSSLGLLT+KF+ LI++ +DG LDLN  AD 
Sbjct: 111 CNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFIALIKQAEDGILDLNNAADT 170

Query: 206 LEVVQKRRIYDITNVLEGISLIEKTSKN 233
           LE VQKRRIYDITNV EGI LIEK  KN
Sbjct: 171 LE-VQKRRIYDITNVFEGIGLIEKKLKN 197


>IMGA|Medtr3g156310.1 Transcription factor E2F/dimerisation partner
           (TDP) chr03_pseudomolecule_IMGAG_V3 40970794-40965713 E
           EGN_Mt090430 20090702
          Length = 390

 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 65/78 (83%), Gaps = 4/78 (5%)

Query: 156 QGSNAESPNGLNPATGCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIY 215
           Q SN +S   LN AT  RYDSSLGLLT+KF+ LI E KDGTLDLN+TA++L+ VQKRRIY
Sbjct: 88  QISNTDS---LNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILK-VQKRRIY 143

Query: 216 DITNVLEGISLIEKTSKN 233
           DITNVLEGI LIEKTSKN
Sbjct: 144 DITNVLEGIGLIEKTSKN 161