Jatropha Genome Database

JcCB0006421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.20 + phase: 0 
         (427 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g030970.1 Eukaryotic initiation factor 3, gamma subun...   540   e-154

>IMGA|Medtr1g030970.1 Eukaryotic initiation factor 3, gamma subunit
           chr01_pseudomolecule_IMGAG_V3 7403333-7410096 E
           EGN_Mt090430 20090702
          Length = 503

 Score =  540 bits (1392), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/423 (64%), Positives = 325/423 (76%), Gaps = 12/423 (2%)

Query: 15  RVTWEGCSVLLDINDGDRLVFSRLTPGSNLKIGNKNLSLRPLIGCPFGSLFQIENGKEG- 73
           RVTWEGCSVLLDINDGDRLVF+RL+P + LKIGNKN SL+PLIGCPFG++FQ++   +G 
Sbjct: 56  RVTWEGCSVLLDINDGDRLVFARLSPAAKLKIGNKNCSLQPLIGCPFGTVFQLDTSSDGA 115

Query: 74  PCLSRFIPSKQADLYNACYLGNNAEEKSDCEMIDESRDNRALIDNNKAQSLTGDDIDAMR 133
           P LS F P    +       G    E  D  +  E RDNR+LIDNN AQSLTG+DI+ MR
Sbjct: 116 PFLSPFQPKGNINNTEDIKDGRFQAESKDGPLTGELRDNRSLIDNNTAQSLTGEDIEDMR 175

Query: 134 RQGAKGEEIIDALIANSATFEKKTLFSQEKYRLKKQKKYAPRVLLRRPFTRSICETYFKK 193
           RQGAKG+EII+ALIANSATF+KKT FSQEKYRLKKQKKYAP+VL+RRP  RSICE YF K
Sbjct: 176 RQGAKGDEIIEALIANSATFDKKTSFSQEKYRLKKQKKYAPKVLIRRPVARSICEAYFMK 235

Query: 194 YPARIGYLRIDALSLLLSMANVTANSDILVMDMVGGLLTGAVAERLGGTGYVCSTYLGDT 253
           +P +IG+LR+D LSLLLSMANV++NSDILV+DMVGGLLTGAVAERLGGTG+VC++YLG  
Sbjct: 236 HPLKIGFLRVDTLSLLLSMANVSSNSDILVVDMVGGLLTGAVAERLGGTGFVCNSYLGKA 295

Query: 254 PHSVDIVRMFNFNNDICKRIVRASLSDLCLAQNETSNQSCAHEDAPMES---NGQTXXXX 310
           P S+DIVR+FN +++ICKRIVR+S+SDL L+Q E+S Q+  H+D  +ES   N       
Sbjct: 296 P-SMDIVRIFNLSDEICKRIVRSSISDL-LSQKESSQQNPKHDDGSVESQLNNQMCASVS 353

Query: 311 XXXXXXXXXPEAADIDPD------PTASPASKISKVHKAGERATDEALKLWKENGFSSLI 364
                       +D+  D       +  PA +  K  KAGE+A+ E +  WKENGFSSLI
Sbjct: 354 MEEISHSSENGISDLGADNAENIESSTFPALRACKAIKAGEKASQEIIDSWKENGFSSLI 413

Query: 365 IAAPDLDPWSLVNEILPLLSYSAPFAIYHQYLQPLATCMHNLQLGKMAIGLQISEPWLRE 424
           IAAPDLD W+L+ ++LPLLS SAPFAIYHQYLQPLATCMHNLQL KMAIGLQI+EPWLRE
Sbjct: 414 IAAPDLDTWTLIKDLLPLLSNSAPFAIYHQYLQPLATCMHNLQLEKMAIGLQITEPWLRE 473

Query: 425 YQV 427
           YQV
Sbjct: 474 YQV 476