Jatropha Genome Database

JcCB0006421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.10 - phase: 0 
         (211 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g030900.1 Zinc finger, C2H2-type chr01_pseudomolecule...   203   4e-53
IMGA|Medtr3g098000.1 T2E6.3, related chr03_pseudomolecule_IMGAG_...    79   2e-15

>IMGA|Medtr1g030900.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 7363591-7359712 E
           EGN_Mt090430 20090702
          Length = 403

 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 120/198 (60%), Gaps = 7/198 (3%)

Query: 1   MALLTFLPEQRE-KGXXXXXXXXXXXXXXXXXXXPSSWDQIKNLLTCKQVEDSSVHDPSK 59
           MALL  LPEQ   K                    PSSWDQIKNLLTCKQ+E S VHDPSK
Sbjct: 1   MALLNSLPEQSHPKTKTTLPKHKQKNQQQQKQKPPSSWDQIKNLLTCKQIEVSRVHDPSK 60

Query: 60  --NXXXXXXXXXXXXXXXXFRDVVHGNTRVVDRADNS-PESSIVGQETGLLSRKPVXXXX 116
             N                FRDVVHGNTRVV R+DNS PESSI+GQET LL RKPV    
Sbjct: 61  PNNNNGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVNASS 120

Query: 117 XXXXXXXXXXXXXA---TYTSSSRGMQFRKLSGCYECHMIVDPSRYPTPRTTICACSHCG 173
                            T +SSSRGMQFRKLSGCYECHMIVDPSR P PR+T+C C  CG
Sbjct: 121 TRSASCSGKSSNGGGNYTSSSSSRGMQFRKLSGCYECHMIVDPSRLPIPRSTLCRCDQCG 180

Query: 174 EVFPKSESLELHQKVRHA 191
           EVFPK ESLELHQ VRHA
Sbjct: 181 EVFPKIESLELHQAVRHA 198


>IMGA|Medtr3g098000.1 T2E6.3, related chr03_pseudomolecule_IMGAG_V3
           23620750-23618902 E EGN_Mt090430 20090702
          Length = 452

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%), Gaps = 5/59 (8%)

Query: 137 RGMQFRKLSGCYECHMIVDP----SRYPTPRTTICACSHCGEVFPKSESLELHQKVRHA 191
           RGMQFR+LSGCYEC M+VDP    +R  + R++IC+C  CGE+  K+ESLELHQ V+HA
Sbjct: 183 RGMQFRRLSGCYECRMVVDPVLGFTRDSSLRSSICSCPDCGEIM-KTESLELHQAVKHA 240